7YMB

Structure of Alcohol dehydrogenase from Candida glabrata(CgADH)complexed with NADPH

• PDB DOI: https://doi.org/10.2210/pdb7YMB/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Nakaseomyces glabratus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-07-28 Released: 2023-08-02 
• Deposition Author(s): Sun, Z.W., Liu, Y.F., Xu, G.C., Ni, Y.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 0.220 
• R-Value Work: 0.185 
• R-Value Observed: 0.187 

Literature

rational desigen of CgADH from Candida glabrata for stereocomplementary reduction of azacyclone.

Sun, Z.W., Ni, Y., Xu, G.C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 39.81 kDa 
• Atom Count: 3,038 
• Modelled Residue Count: 343 
• Deposited Residue Count: 351 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NADPH-dependent methylglyoxal reductase GRE2	A	351	Nakaseomyces glabratus	Mutation(s): 0
UniProt
Find proteins for A0A0W0CJZ6 (Candida glabrata) Explore A0A0W0CJZ6  Go to UniProtKB:  A0A0W0CJZ6

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NDP (Subject of Investigation/LOI)	B [auth A]	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C21 H30 N7 O17 P3 ACFIXJIJDZMPPO-NNYOXOHSSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 0.220 
• R-Value Work: 0.185 
• R-Value Observed: 0.187 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.644	α = 90
b = 48.322	β = 96.63
c = 70.475	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
PROTEUM PLUS	data reduction
PROTEUM PLUS	data scaling

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-08-02 
Deposition Author(s): Sun, Z.W., Liu, Y.F., Xu, G.C., Ni, Y.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	22078127

Revision History  

• Version 1.0: 2023-08-02
  Type: Initial release