7YE2 | pdb_00007ye2

Deposited: 2022-07-05 Released: 2023-01-18
Deposition Author(s): Wu, X.X., Zhang, Y.
Funding Organization(s): Other government, National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

(2023) Nucleic Acids Res

Macromolecule Content

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerase subunit alpha	A, B	338	Caulobacter vibrioides NA1000	Mutation(s): 0 Gene Names: rpoA EC: 2.7.7.6
UniProt
Find proteins for B8H4F8 (Caulobacter vibrioides (strain NA1000 / CB15N)) Explore B8H4F8 Go to UniProtKB: B8H4F8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	B8H4F8
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Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerase subunit beta	C	1,356	Caulobacter vibrioides NA1000	Mutation(s): 0 Gene Names: rpoB EC: 2.7.7.6
UniProt
Find proteins for B8GZW7 (Caulobacter vibrioides (strain NA1000 / CB15N)) Explore B8GZW7 Go to UniProtKB: B8GZW7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	B8GZW7
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Reference Sequence

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerase subunit beta'	D	1,396	Caulobacter vibrioides NA1000	Mutation(s): 0 Gene Names: rpoC EC: 2.7.7.6
UniProt
Find proteins for A0A0H3C4W8 (Caulobacter vibrioides (strain NA1000 / CB15N)) Explore A0A0H3C4W8 Go to UniProtKB: A0A0H3C4W8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0H3C4W8
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Reference Sequence

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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerase subunit omega	E	119	Caulobacter vibrioides NA1000	Mutation(s): 0 Gene Names: rpoZ EC: 2.7.7.6
UniProt
Find proteins for B8H618 (Caulobacter vibrioides (strain NA1000 / CB15N)) Explore B8H618 Go to UniProtKB: B8H618
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	B8H618
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Reference Sequence

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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA polymerase sigma factor RpoD	F	652	Caulobacter vibrioides NA1000	Mutation(s): 0 Gene Names: rpoD
UniProt
Find proteins for A0A0H3CAV3 (Caulobacter vibrioides (strain NA1000 / CB15N)) Explore A0A0H3CAV3 Go to UniProtKB: A0A0H3CAV3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0H3CAV3
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Reference Sequence

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Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
Cell cycle regulatory protein GcrA	I [auth G]	173	Caulobacter vibrioides NA1000	Mutation(s): 0 Gene Names: gcrA
UniProt
Find proteins for A0A0H3C9J4 (Caulobacter vibrioides (strain NA1000 / CB15N)) Explore A0A0H3C9J4 Go to UniProtKB: A0A0H3C9J4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0H3C9J4
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Reference Sequence

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Molecule	Chains	Length	Organism
Entity ID: 6
DNA (90-MER)-non template	G [auth H]	90	Caulobacter vibrioides NA1000
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Reference Sequence

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Molecule	Chains	Length	Organism
Entity ID: 7
DNA (90-MER)-template	H [auth I]	90	Caulobacter vibrioides NA1000
Sequence Annotations Expand
Reference Sequence

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain M [auth G] SDF format, chain K [auth D] SDF format, chain J [auth D] MOL2 format, chain M [auth G] MOL2 format, chain K [auth D] MOL2 format, chain J [auth D] mmCIF format, chain M [auth G] mmCIF format, chain K [auth D] mmCIF format, chain J [auth D]	J [auth D], K [auth D], M [auth G]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain J [auth D] Focus chain K [auth D] Focus chain M [auth G] Interactions & Density Focus chain J [auth D] Focus chain K [auth D] Focus chain M [auth G]
MG Query on MG Download:Ideal Coordinates CCD File SDF format, chain L [auth D] MOL2 format, chain L [auth D] mmCIF format, chain L [auth D]	L [auth D]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain L [auth D] Interactions & Density Focus chain L [auth D]