Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with D-2-hydroxyglutarate and factor X-derived peptide (39mer-4Ser)
Nakashima, Y., Brewitz, L., Schofield, C.J.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Aspartyl/asparaginyl beta-hydroxylase | 429 | Homo sapiens | Mutation(s): 0  Gene Names: ASPH EC: 1.14.11.16 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q12797 (Homo sapiens) Explore Q12797  Go to UniProtKB:  Q12797 | |||||
PHAROS:  Q12797 GTEx:  ENSG00000198363  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q12797 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Coagulation factor X | 39 | synthetic construct | Mutation(s): 0  | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P00742 (Homo sapiens) Explore P00742  Go to UniProtKB:  P00742 | |||||
PHAROS:  P00742 GTEx:  ENSG00000126218  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00742 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
2HG (Subject of Investigation/LOI) Query on 2HG | F [auth A] | (2R)-2-hydroxypentanedioic acid C5 H8 O5 HWXBTNAVRSUOJR-GSVOUGTGSA-N | |||
GOL Query on GOL | C [auth A], D [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
MN Query on MN | E [auth A] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 49.879 | α = 90 |
b = 91.063 | β = 90 |
c = 122.351 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
xia2 | data reduction |
xia2 | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Medical Research Council (MRC, United Kingdom) | United Kingdom | -- |