7Y9O

Crystal structure of a CYP109B4 variant from Bacillus sonorensis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.84 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.191 
  • R-Value Observed: 0.192 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Rationally Controlling Selective Steroid Hydroxylation via Scaffold Sampling of a P450 Family

Zhang, X.Shen, P.Zhao, J.Chen, Y.Li, X.Huang, J.W.Zhang, L.Li, Q.Gao, C.Xing, Q.Chen, C.C.Guo, R.T.Li, A.

(2023) ACS Catal 13: 1280-1289


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome P450 monooxygenase YjiB406Bacillus sonorensis L12Mutation(s): 10 
Gene Names: BSONL12_06623
UniProt
Find proteins for M5PFT9 (Bacillus sonorensis L12)
Explore M5PFT9 
Go to UniProtKB:  M5PFT9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupM5PFT9
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.84 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.191 
  • R-Value Observed: 0.192 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 47.87α = 90
b = 62.602β = 90
c = 140.526γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
SAINTdata reduction
SAINTdata scaling
PDB_EXTRACTdata extraction
PHASERphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2023-05-03
    Type: Initial release
  • Version 1.1: 2023-11-29
    Changes: Data collection, Refinement description