7Y86 | pdb_00007y86

CcpS mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 
    0.217 (Depositor), 0.223 (DCC) 
  • R-Value Work: 
    0.194 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 7Y86

This is version 1.1 of the entry. See complete history

Literature

A link between STK signalling and capsular polysaccharide synthesis in Streptococcus suis.

Tang, J.Guo, M.Chen, M.Xu, B.Ran, T.Wang, W.Ma, Z.Lin, H.Fan, H.

(2023) Nat Commun 14: 2480-2480

  • DOI: https://doi.org/10.1038/s41467-023-38210-4
  • Primary Citation Related Structures: 
    7Y86, 7Y8Z

  • PubMed Abstract: 

    Synthesis of capsular polysaccharide (CPS), an important virulence factor of pathogenic bacteria, is modulated by the CpsBCD phosphoregulatory system in Streptococcus. Serine/threonine kinases (STKs, e.g. Stk1) can also regulate CPS synthesis, but the underlying mechanisms are unclear. Here, we identify a protein (CcpS) that is phosphorylated by Stk1 and modulates the activity of phosphatase CpsB in Streptococcus suis, thus linking Stk1 to CPS synthesis. The crystal structure of CcpS shows an intrinsically disordered region at its N-terminus, including two threonine residues that are phosphorylated by Stk1. The activity of phosphatase CpsB is inhibited when bound to non-phosphorylated CcpS. Thus, CcpS modulates the activity of phosphatase CpsB thereby altering CpsD phosphorylation, which in turn modulates the expression of the Wzx-Wzy pathway and thus CPS production.


  • Organizational Affiliation
    • MOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing, 210095, China.

Macromolecule Content 

  • Total Structure Weight: 21 kDa 
  • Atom Count: 1,611 
  • Modeled Residue Count: 164 
  • Deposited Residue Count: 178 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
UPF0297 protein A7J08_00425
A, B
89Streptococcus suisMutation(s): 0 
Gene Names: 
UniProt
Find proteins for A0A0K2E3A3 (Streptococcus suis)
Explore A0A0K2E3A3 
Go to UniProtKB:  A0A0K2E3A3
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0K2E3A3
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free:  0.217 (Depositor), 0.223 (DCC) 
  • R-Value Work:  0.194 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 44.958α = 90
b = 49.082β = 90
c = 102.581γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
autoPROCdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31770074

Revision History  (Full details and data files)

  • Version 1.0: 2023-05-10
    Type: Initial release
  • Version 1.1: 2023-11-29
    Changes: Data collection, Refinement description