7Y7N | pdb_00007y7n

Crystal structure of DUF371 domain-containing protein from Methanobrevibacter ruminantium

PDB DOI: https://doi.org/10.2210/pdb7Y7N/pdb

Classification: STRUCTURAL GENOMICS
Organism(s): Methanobrevibacter ruminantium M1
Expression System: Escherichia
Mutation(s): No

Deposited: 2022-06-22 Released: 2023-07-12
Deposition Author(s): Yang, Q., Lai, Z.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.76 Å
R-Value Free:
0.269 (Depositor), 0.286 (DCC)
R-Value Work:
0.224 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of DUF371 domain-containing protein from methanobrevibacter ruminantium

Yang, Q., Lai, Z.

To be published.

Macromolecule Content

Total Structure Weight: 15.42 kDa
Atom Count: 1,128
Modeled Residue Count: 137
Deposited Residue Count: 137
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	A	137	Methanobrevibacter ruminantium M1	Mutation(s): 0 Gene Names: mru_1462
UniProt
Find proteins for D3E451 (Methanobrevibacter ruminantium (strain ATCC 35063 / DSM 1093 / JCM 13430 / OCM 146 / M1)) Explore D3E451 Go to UniProtKB: D3E451
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	D3E451
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.76 Å
R-Value Free: 0.269 (Depositor), 0.286 (DCC)
R-Value Work: 0.224 (Depositor)

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 47.354	α = 90
b = 47.354	β = 90
c = 135.877	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-07-12

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History (Full details and data files)

Version 1.0: 2023-07-12
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.