7Y5M | pdb_00007y5m

The OTU domain of Tacheng Tick Virus 1

PDB DOI: https://doi.org/10.2210/pdb7Y5M/pdb

Classification: VIRAL PROTEIN
Organism(s): Tacheng Tick Virus 1
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-06-17 Released: 2023-06-21
Deposition Author(s): Li, Z., Wang, W.J., Xiao, Y.S., Sun, L.T.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free:
0.230 (Depositor), 0.231 (DCC)
R-Value Work:
0.198 (Depositor), 0.198 (DCC)
R-Value Observed:
0.199 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 7Y5M

This is version 1.2 of the entry. See complete history.

Literature

The OTU domain of Tacheng Tick Virus 1

Li, Z., Wang, W.J., Xiao, Y.S., Sun, L.T.

To be published.

Macromolecule Content

Total Structure Weight: 19.23 kDa
Atom Count: 1,373
Modeled Residue Count: 155
Deposited Residue Count: 170
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA-directed RNA polymerase	A	170	Tacheng Tick Virus 1	Mutation(s): 0 EC: 2.7.7.48
UniProt
Find proteins for A0A0B5KXW6 (Tacheng Tick Virus 1) Explore A0A0B5KXW6 Go to UniProtKB: A0A0B5KXW6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0B5KXW6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.230 (Depositor), 0.231 (DCC)
R-Value Work: 0.198 (Depositor), 0.198 (DCC)
R-Value Observed: 0.199 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 47.747	α = 90
b = 58.11	β = 90
c = 59.42	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
AutoSol	phasing

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2023-06-21

Deposition Author(s):

Funding Organization	Location	Grant Number
Other government		JCYJ20190807155011406
Other government		KQTD20180411143323605
Other government		GXWD20201231165807008
Other government		20200825113322001
Other government		JSGG20200225152008136
Other government		2021B1515020047
Other government		31971147

Revision History (Full details and data files)

Version 1.0: 2023-06-21
Type: Initial release
Version 1.1: 2023-11-15
Changes: Data collection, Source and taxonomy
Version 1.2: 2023-11-29
Changes: Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.