7Y44

Re-refinement of damage free X-ray structure of bovine cytochrome c oxidase at 1.9 angstrom resolution

PDB DOI: https://doi.org/10.2210/pdb7Y44/pdb

Classification: OXIDOREDUCTASE
Organism(s): Bos taurus
Mutation(s): No
Membrane Protein: Yes PDBTM

Deposited: 2022-06-14 Released: 2022-07-20
Deposition Author(s): Tsukihara, T., Hirata, K., Ago, H.
Funding Organization(s): Japan Society for the Promotion of Science (JSPS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.227
R-Value Work: 0.185
R-Value Observed: 0.188

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Literature

Determination of damage-free crystal structure of an X-ray-sensitive protein using an XFEL.

Hirata, K., Shinzawa-Itoh, K., Yano, N., Takemura, S., Kato, K., Hatanaka, M., Muramoto, K., Kawahara, T., Tsukihara, T., Yamashita, E., Tono, K., Ueno, G., Hikima, T., Murakami, H., Inubushi, Y., Yabashi, M., Ishikawa, T., Yamamoto, M., Ogura, T., Sugimoto, H., Shen, J.R., Yoshikawa, S., Ago, H.

(2014) Nat Methods 11: 734-736

PubMed: 24813624 Search on PubMed
DOI: https://doi.org/10.1038/nmeth.2962
Primary Citation of Related Structures:
3WG7, 7Y44

PubMed Abstract:
We report a method of femtosecond crystallography for solving radiation damage-free crystal structures of large proteins at sub-angstrom spatial resolution, using a large single crystal and the femtosecond pulses of an X-ray free-electron laser (XFEL). We demonstrated the performance of the method by determining a 1.9-Å radiation damage-free structure of bovine cytochrome c oxidase, a large (420-kDa), highly radiation-sensitive membrane protein.

Organizational Affiliation

1] RIKEN SPring-8 Center, Sayo, Japan. [2] Japan Science and Technology Agency (JST), Core Research for Evolutional Science and Technology (CREST), Kawaguchi, Japan. [3].

Macromolecule Content

Total Structure Weight: 456.49 kDa
Atom Count: 34,120
Modelled Residue Count: 3,558
Deposited Residue Count: 3,614
Unique protein chains: 13

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase subunit 1	A, N	514	Bos taurus	Mutation(s): 0 EC: 7.1.1.9 Membrane Entity: Yes
UniProt
Find proteins for P00396 (Bos taurus) Explore P00396 Go to UniProtKB: P00396
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P00396
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Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase subunit 2	B, O	227	Bos taurus	Mutation(s): 0 EC: 7.1.1.9 Membrane Entity: Yes
UniProt
Find proteins for P68530 (Bos taurus) Explore P68530 Go to UniProtKB: P68530
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Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P68530
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Reference Sequence

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase subunit 3	C, P	261	Bos taurus	Mutation(s): 0 EC: 7.1.1.9 Membrane Entity: Yes
UniProt
Find proteins for P00415 (Bos taurus) Explore P00415 Go to UniProtKB: P00415
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UniProt Group	P00415
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Reference Sequence

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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase subunit 4 isoform 1	D, Q	147	Bos taurus	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for P00423 (Bos taurus) Explore P00423 Go to UniProtKB: P00423
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UniProt Group	P00423
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Reference Sequence

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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase subunit 5A	E, R	109	Bos taurus	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for P00426 (Bos taurus) Explore P00426 Go to UniProtKB: P00426
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UniProt Group	P00426
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Reference Sequence

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Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase subunit 5B, mitochondrial	F, S	98	Bos taurus	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for P00428 (Bos taurus) Explore P00428 Go to UniProtKB: P00428
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UniProt Group	P00428
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Reference Sequence

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Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase subunit 6A2	G, T	85	Bos taurus	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for P07471 (Bos taurus) Explore P07471 Go to UniProtKB: P07471
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UniProt Group	P07471
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Reference Sequence

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Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase subunit 6B1	H, U	85	Bos taurus	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for P00429 (Bos taurus) Explore P00429 Go to UniProtKB: P00429
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UniProt Group	P00429
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Reference Sequence

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Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase subunit 6C	I, V	73	Bos taurus	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for P04038 (Bos taurus) Explore P04038 Go to UniProtKB: P04038
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UniProt Group	P04038
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Reference Sequence

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Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase subunit 7A1	J, W	59	Bos taurus	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for P07470 (Bos taurus) Explore P07470 Go to UniProtKB: P07470
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UniProt Group	P07470
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Reference Sequence

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Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase subunit 7B	K, X	56	Bos taurus	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for P13183 (Bos taurus) Explore P13183 Go to UniProtKB: P13183
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UniProt Group	P13183
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Reference Sequence

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Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase subunit 7C, mitochondrial	L, Y	47	Bos taurus	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for P00430 (Bos taurus) Explore P00430 Go to UniProtKB: P00430
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UniProt Group	P00430
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Reference Sequence

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Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase subunit 8B	M, Z	46	Bos taurus	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for P10175 (Bos taurus) Explore P10175 Go to UniProtKB: P10175
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UniProt Group	P10175
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Reference Sequence

Small Molecules

Ligands 16 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CDL Query on CDL Download Ideal Coordinates CCD File SDF format, chain KE [auth T] SDF format, chain ND [auth P] SDF format, chain PB [auth G] SDF format, chain ZA [auth C] MOL2 format, chain KE [auth T] MOL2 format, chain ND [auth P] MOL2 format, chain PB [auth G] MOL2 format, chain ZA [auth C] mmCIF format, chain KE [auth T] mmCIF format, chain ND [auth P] mmCIF format, chain PB [auth G] mmCIF format, chain ZA [auth C]	KE [auth T], ND [auth P], PB [auth G], ZA [auth C]	CARDIOLIPIN C₈₁ H₁₅₆ O₁₇ P₂ XVTUQDWPJJBEHJ-KZCWQMDCSA-L		Interactions Focus chain KE [auth T] Focus chain ND [auth P] Focus chain PB [auth G] Focus chain ZA [auth C] Interactions & Density Focus chain KE [auth T] Focus chain ND [auth P] Focus chain PB [auth G] Focus chain ZA [auth C]
TGL Query on TGL Download Ideal Coordinates CCD File SDF format, chain CC [auth L] SDF format, chain DD [auth O] SDF format, chain IB [auth D] SDF format, chain QA [auth B] SDF format, chain VE [auth Y] SDF format, chain YD [auth Q] MOL2 format, chain CC [auth L] MOL2 format, chain DD [auth O] MOL2 format, chain IB [auth D] MOL2 format, chain QA [auth B] MOL2 format, chain VE [auth Y] MOL2 format, chain YD [auth Q] mmCIF format, chain CC [auth L] mmCIF format, chain DD [auth O] mmCIF format, chain IB [auth D] mmCIF format, chain QA [auth B] mmCIF format, chain VE [auth Y] mmCIF format, chain YD [auth Q]	CC [auth L] DD [auth O] IB [auth D] QA [auth B] VE [auth Y] CC [auth L], DD [auth O], IB [auth D], QA [auth B], VE [auth Y], YD [auth Q]	TRISTEAROYLGLYCEROL C₅₇ H₁₁₀ O₆ DCXXMTOCNZCJGO-UHFFFAOYSA-N		Interactions Focus chain CC [auth L] Focus chain DD [auth O] Focus chain IB [auth D] Focus chain QA [auth B] Focus chain VE [auth Y] Focus chain YD [auth Q] Interactions & Density Focus chain CC [auth L] Focus chain DD [auth O] Focus chain IB [auth D] Focus chain QA [auth B] Focus chain VE [auth Y] Focus chain YD [auth Q]
HEA Query on HEA Download Ideal Coordinates CCD File SDF format, chain AA [auth A] SDF format, chain BA [auth A] SDF format, chain JC [auth N] SDF format, chain KC [auth N] MOL2 format, chain AA [auth A] MOL2 format, chain BA [auth A] MOL2 format, chain JC [auth N] MOL2 format, chain KC [auth N] mmCIF format, chain AA [auth A] mmCIF format, chain BA [auth A] mmCIF format, chain JC [auth N] mmCIF format, chain KC [auth N]	AA [auth A], BA [auth A], JC [auth N], KC [auth N]	HEME-A C₄₉ H₅₆ Fe N₄ O₆ ZGGYGTCPXNDTRV-PRYGPKJJSA-L		Interactions Focus chain AA [auth A] Focus chain BA [auth A] Focus chain JC [auth N] Focus chain KC [auth N] Interactions & Density Focus chain AA [auth A] Focus chain BA [auth A] Focus chain JC [auth N] Focus chain KC [auth N]
PEK Query on PEK Download Ideal Coordinates CCD File SDF format, chain CB [auth C] SDF format, chain EB [auth C] SDF format, chain LD [auth P] SDF format, chain QB [auth G] SDF format, chain QD [auth P] SDF format, chain XA [auth C] MOL2 format, chain CB [auth C] MOL2 format, chain EB [auth C] MOL2 format, chain LD [auth P] MOL2 format, chain QB [auth G] MOL2 format, chain QD [auth P] MOL2 format, chain XA [auth C] mmCIF format, chain CB [auth C] mmCIF format, chain EB [auth C] mmCIF format, chain LD [auth P] mmCIF format, chain QB [auth G] mmCIF format, chain QD [auth P] mmCIF format, chain XA [auth C]	CB [auth C] EB [auth C] LD [auth P] QB [auth G] QD [auth P] CB [auth C], EB [auth C], LD [auth P], QB [auth G], QD [auth P], XA [auth C]	(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE C₄₃ H₇₈ N O₈ P ANRKEHNWXKCXDB-BHFWLYLHSA-N		Interactions Focus chain CB [auth C] Focus chain EB [auth C] Focus chain LD [auth P] Focus chain QB [auth G] Focus chain QD [auth P] Focus chain XA [auth C] Interactions & Density Focus chain CB [auth C] Focus chain EB [auth C] Focus chain LD [auth P] Focus chain QB [auth G] Focus chain QD [auth P] Focus chain XA [auth C]
PSC Query on PSC Download Ideal Coordinates CCD File SDF format, chain QC [auth N] SDF format, chain SA [auth B] MOL2 format, chain QC [auth N] MOL2 format, chain SA [auth B] mmCIF format, chain QC [auth N] mmCIF format, chain SA [auth B]	QC [auth N], SA [auth B]	(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE C₄₂ H₈₁ N O₈ P JLPULHDHAOZNQI-AUSZDXHESA-O		Interactions Focus chain QC [auth N] Focus chain SA [auth B] Interactions & Density Focus chain QC [auth N] Focus chain SA [auth B]
PGV Query on PGV Download Ideal Coordinates CCD File SDF format, chain DB [auth C] SDF format, chain GA [auth A] SDF format, chain HA [auth A] SDF format, chain ID [auth P] SDF format, chain JD [auth P] SDF format, chain MD [auth P] SDF format, chain PC [auth N] SDF format, chain YA [auth C] MOL2 format, chain DB [auth C] MOL2 format, chain GA [auth A] MOL2 format, chain HA [auth A] MOL2 format, chain ID [auth P] MOL2 format, chain JD [auth P] MOL2 format, chain MD [auth P] MOL2 format, chain PC [auth N] MOL2 format, chain YA [auth C] mmCIF format, chain DB [auth C] mmCIF format, chain GA [auth A] mmCIF format, chain HA [auth A] mmCIF format, chain ID [auth P] mmCIF format, chain JD [auth P] mmCIF format, chain MD [auth P] mmCIF format, chain PC [auth N] mmCIF format, chain YA [auth C]	DB [auth C] GA [auth A] HA [auth A] ID [auth P] JD [auth P] DB [auth C], GA [auth A], HA [auth A], ID [auth P], JD [auth P], MD [auth P], PC [auth N], YA [auth C]	(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE C₄₀ H₇₇ O₁₀ P ADYWCMPUNIVOEA-GPJPVTGXSA-N		Interactions Focus chain DB [auth C] Focus chain GA [auth A] Focus chain HA [auth A] Focus chain ID [auth P] Focus chain JD [auth P] Focus chain MD [auth P] Focus chain PC [auth N] Focus chain YA [auth C] Interactions & Density Focus chain DB [auth C] Focus chain GA [auth A] Focus chain HA [auth A] Focus chain ID [auth P] Focus chain JD [auth P] Focus chain MD [auth P] Focus chain PC [auth N] Focus chain YA [auth C]
DMU Query on DMU Download Ideal Coordinates CCD File SDF format, chain AC [auth K] SDF format, chain AE [auth Q] SDF format, chain BC [auth K] SDF format, chain DC [auth L] SDF format, chain HB [auth C] SDF format, chain HC [auth M] SDF format, chain HD [auth O] SDF format, chain JB [auth D] SDF format, chain LE [auth T] SDF format, chain PA [auth A] SDF format, chain QE [auth X] SDF format, chain RE [auth X] SDF format, chain SB [auth G] SDF format, chain SE [auth X] SDF format, chain TE [auth X] SDF format, chain VA [auth B] SDF format, chain VD [auth P] SDF format, chain WB [auth K] SDF format, chain XB [auth K] SDF format, chain XD [auth P] SDF format, chain YB [auth K] SDF format, chain YE [auth Z] SDF format, chain ZB [auth K] MOL2 format, chain AC [auth K] MOL2 format, chain AE [auth Q] MOL2 format, chain BC [auth K] MOL2 format, chain DC [auth L] MOL2 format, chain HB [auth C] MOL2 format, chain HC [auth M] MOL2 format, chain HD [auth O] MOL2 format, chain JB [auth D] MOL2 format, chain LE [auth T] MOL2 format, chain PA [auth A] MOL2 format, chain QE [auth X] MOL2 format, chain RE [auth X] MOL2 format, chain SB [auth G] MOL2 format, chain SE [auth X] MOL2 format, chain TE [auth X] MOL2 format, chain VA [auth B] MOL2 format, chain VD [auth P] MOL2 format, chain WB [auth K] MOL2 format, chain XB [auth K] MOL2 format, chain XD [auth P] MOL2 format, chain YB [auth K] MOL2 format, chain YE [auth Z] MOL2 format, chain ZB [auth K] mmCIF format, chain AC [auth K] mmCIF format, chain AE [auth Q] mmCIF format, chain BC [auth K] mmCIF format, chain DC [auth L] mmCIF format, chain HB [auth C] mmCIF format, chain HC [auth M] mmCIF format, chain HD [auth O] mmCIF format, chain JB [auth D] mmCIF format, chain LE [auth T] mmCIF format, chain PA [auth A] mmCIF format, chain QE [auth X] mmCIF format, chain RE [auth X] mmCIF format, chain SB [auth G] mmCIF format, chain SE [auth X] mmCIF format, chain TE [auth X] mmCIF format, chain VA [auth B] mmCIF format, chain VD [auth P] mmCIF format, chain WB [auth K] mmCIF format, chain XB [auth K] mmCIF format, chain XD [auth P] mmCIF format, chain YB [auth K] mmCIF format, chain YE [auth Z] mmCIF format, chain ZB [auth K]	AC [auth K] AE [auth Q] BC [auth K] DC [auth L] HB [auth C] AC [auth K], AE [auth Q], BC [auth K], DC [auth L], HB [auth C], HC [auth M], HD [auth O], JB [auth D], LE [auth T], PA [auth A], QE [auth X], RE [auth X], SB [auth G], SE [auth X], TE [auth X], VA [auth B], VD [auth P], WB [auth K], XB [auth K], XD [auth P], YB [auth K], YE [auth Z], ZB [auth K]	DECYL-BETA-D-MALTOPYRANOSIDE C₂₂ H₄₂ O₁₁ WOQQAWHSKSSAGF-WXFJLFHKSA-N		Interactions Focus chain AC [auth K] Focus chain AE [auth Q] Focus chain BC [auth K] Focus chain DC [auth L] Focus chain HB [auth C] Focus chain HC [auth M] Focus chain HD [auth O] Focus chain JB [auth D] Focus chain LE [auth T] Focus chain PA [auth A] Focus chain QE [auth X] Focus chain RE [auth X] Focus chain SB [auth G] Focus chain SE [auth X] Focus chain TE [auth X] Focus chain VA [auth B] Focus chain VD [auth P] Focus chain WB [auth K] Focus chain XB [auth K] Focus chain XD [auth P] Focus chain YB [auth K] Focus chain YE [auth Z] Focus chain ZB [auth K] Interactions & Density Focus chain AC [auth K] Focus chain AE [auth Q] Focus chain BC [auth K] Focus chain DC [auth L] Focus chain HB [auth C] Focus chain HC [auth M] Focus chain HD [auth O] Focus chain JB [auth D] Focus chain LE [auth T] Focus chain PA [auth A] Focus chain QE [auth X] Focus chain RE [auth X] Focus chain SB [auth G] Focus chain SE [auth X] Focus chain TE [auth X] Focus chain VA [auth B] Focus chain VD [auth P] Focus chain WB [auth K] Focus chain XB [auth K] Focus chain XD [auth P] Focus chain YB [auth K] Focus chain YE [auth Z] Focus chain ZB [auth K]
CHD Query on CHD Download Ideal Coordinates CCD File SDF format, chain AB [auth C] SDF format, chain BB [auth C] SDF format, chain EC [auth L] SDF format, chain JE [auth T] SDF format, chain NE [auth W] SDF format, chain OD [auth P] SDF format, chain PD [auth P] SDF format, chain RB [auth G] SDF format, chain UE [auth X] SDF format, chain VB [auth J] SDF format, chain WE [auth Y] MOL2 format, chain AB [auth C] MOL2 format, chain BB [auth C] MOL2 format, chain EC [auth L] MOL2 format, chain JE [auth T] MOL2 format, chain NE [auth W] MOL2 format, chain OD [auth P] MOL2 format, chain PD [auth P] MOL2 format, chain RB [auth G] MOL2 format, chain UE [auth X] MOL2 format, chain VB [auth J] MOL2 format, chain WE [auth Y] mmCIF format, chain AB [auth C] mmCIF format, chain BB [auth C] mmCIF format, chain EC [auth L] mmCIF format, chain JE [auth T] mmCIF format, chain NE [auth W] mmCIF format, chain OD [auth P] mmCIF format, chain PD [auth P] mmCIF format, chain RB [auth G] mmCIF format, chain UE [auth X] mmCIF format, chain VB [auth J] mmCIF format, chain WE [auth Y]	AB [auth C] BB [auth C] EC [auth L] JE [auth T] NE [auth W] AB [auth C], BB [auth C], EC [auth L], JE [auth T], NE [auth W], OD [auth P], PD [auth P], RB [auth G], UE [auth X], VB [auth J], WE [auth Y]	CHOLIC ACID C₂₄ H₄₀ O₅ BHQCQFFYRZLCQQ-OELDTZBJSA-N		Interactions Focus chain AB [auth C] Focus chain BB [auth C] Focus chain EC [auth L] Focus chain JE [auth T] Focus chain NE [auth W] Focus chain OD [auth P] Focus chain PD [auth P] Focus chain RB [auth G] Focus chain UE [auth X] Focus chain VB [auth J] Focus chain WE [auth Y] Interactions & Density Focus chain AB [auth C] Focus chain BB [auth C] Focus chain EC [auth L] Focus chain JE [auth T] Focus chain NE [auth W] Focus chain OD [auth P] Focus chain PD [auth P] Focus chain RB [auth G] Focus chain UE [auth X] Focus chain VB [auth J] Focus chain WE [auth Y]
CUA Query on CUA Download Ideal Coordinates CCD File SDF format, chain ED [auth O] SDF format, chain RA [auth B] MOL2 format, chain ED [auth O] MOL2 format, chain RA [auth B] mmCIF format, chain ED [auth O] mmCIF format, chain RA [auth B]	ED [auth O], RA [auth B]	DINUCLEAR COPPER ION Cu₂ ALKZAGKDWUSJED-UHFFFAOYSA-N		Interactions Focus chain ED [auth O] Focus chain RA [auth B] Interactions & Density Focus chain ED [auth O] Focus chain RA [auth B]
PO4 Query on PO4 Download Ideal Coordinates CCD File SDF format, chain ME [auth U] SDF format, chain UB [auth H] MOL2 format, chain ME [auth U] MOL2 format, chain UB [auth H] mmCIF format, chain ME [auth U] mmCIF format, chain UB [auth H]	ME [auth U], UB [auth H]	PHOSPHATE ION O₄ P NBIIXXVUZAFLBC-UHFFFAOYSA-K		Interactions Focus chain ME [auth U] Focus chain UB [auth H] Interactions & Density Focus chain ME [auth U] Focus chain UB [auth H]
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain CE [auth S] SDF format, chain KB [auth F] MOL2 format, chain CE [auth S] MOL2 format, chain KB [auth F] mmCIF format, chain CE [auth S] mmCIF format, chain KB [auth F]	CE [auth S], KB [auth F]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain CE [auth S] Focus chain KB [auth F] Interactions & Density Focus chain CE [auth S] Focus chain KB [auth F]
CU Query on CU Download Ideal Coordinates CCD File SDF format, chain CA [auth A] SDF format, chain LC [auth N] MOL2 format, chain CA [auth A] MOL2 format, chain LC [auth N] mmCIF format, chain CA [auth A] mmCIF format, chain LC [auth N]	CA [auth A], LC [auth N]	COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N		Interactions Focus chain CA [auth A] Focus chain LC [auth N] Interactions & Density Focus chain CA [auth A] Focus chain LC [auth N]
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain AD [auth N] SDF format, chain BD [auth N] SDF format, chain BE [auth R] SDF format, chain CD [auth N] SDF format, chain DE [auth S] SDF format, chain EE [auth S] SDF format, chain FB [auth C] SDF format, chain FC [auth L] SDF format, chain FD [auth O] SDF format, chain FE [auth S] SDF format, chain GB [auth C] SDF format, chain GC [auth L] SDF format, chain GD [auth O] SDF format, chain GE [auth S] SDF format, chain HE [auth S] SDF format, chain IA [auth A] SDF format, chain IC [auth M] SDF format, chain IE [auth S] SDF format, chain JA [auth A] SDF format, chain KA [auth A] SDF format, chain LA [auth A] SDF format, chain LB [auth F] SDF format, chain MA [auth A] SDF format, chain MB [auth F] SDF format, chain NA [auth A] SDF format, chain NB [auth F] SDF format, chain OA [auth A] SDF format, chain OB [auth F] SDF format, chain OE [auth W] SDF format, chain PE [auth W] SDF format, chain RC [auth N] SDF format, chain RD [auth P] SDF format, chain SC [auth N] SDF format, chain SD [auth P] SDF format, chain TA [auth B] SDF format, chain TB [auth G] SDF format, chain TC [auth N] SDF format, chain TD [auth P] SDF format, chain UA [auth B] SDF format, chain UC [auth N] SDF format, chain UD [auth P] SDF format, chain VC [auth N] SDF format, chain WC [auth N] SDF format, chain WD [auth P] SDF format, chain XC [auth N] SDF format, chain XE [auth Y] SDF format, chain YC [auth N] SDF format, chain ZC [auth N] SDF format, chain ZD [auth Q] MOL2 format, chain AD [auth N] MOL2 format, chain BD [auth N] MOL2 format, chain BE [auth R] MOL2 format, chain CD [auth N] MOL2 format, chain DE [auth S] MOL2 format, chain EE [auth S] MOL2 format, chain FB [auth C] MOL2 format, chain FC [auth L] MOL2 format, chain FD [auth O] MOL2 format, chain FE [auth S] MOL2 format, chain GB [auth C] MOL2 format, chain GC [auth L] MOL2 format, chain GD [auth O] MOL2 format, chain GE [auth S] MOL2 format, chain HE [auth S] MOL2 format, chain IA [auth A] MOL2 format, chain IC [auth M] MOL2 format, chain IE [auth S] MOL2 format, chain JA [auth A] MOL2 format, chain KA [auth A] MOL2 format, chain LA [auth A] MOL2 format, chain LB [auth F] MOL2 format, chain MA [auth A] MOL2 format, chain MB [auth F] MOL2 format, chain NA [auth A] MOL2 format, chain NB [auth F] MOL2 format, chain OA [auth A] MOL2 format, chain OB [auth F] MOL2 format, chain OE [auth W] MOL2 format, chain PE [auth W] MOL2 format, chain RC [auth N] MOL2 format, chain RD [auth P] MOL2 format, chain SC [auth N] MOL2 format, chain SD [auth P] MOL2 format, chain TA [auth B] MOL2 format, chain TB [auth G] MOL2 format, chain TC [auth N] MOL2 format, chain TD [auth P] MOL2 format, chain UA [auth B] MOL2 format, chain UC [auth N] MOL2 format, chain UD [auth P] MOL2 format, chain VC [auth N] MOL2 format, chain WC [auth N] MOL2 format, chain WD [auth P] MOL2 format, chain XC [auth N] MOL2 format, chain XE [auth Y] MOL2 format, chain YC [auth N] MOL2 format, chain ZC [auth N] MOL2 format, chain ZD [auth Q] mmCIF format, chain AD [auth N] mmCIF format, chain BD [auth N] mmCIF format, chain BE [auth R] mmCIF format, chain CD [auth N] mmCIF format, chain DE [auth S] mmCIF format, chain EE [auth S] mmCIF format, chain FB [auth C] mmCIF format, chain FC [auth L] mmCIF format, chain FD [auth O] mmCIF format, chain FE [auth S] mmCIF format, chain GB [auth C] mmCIF format, chain GC [auth L] mmCIF format, chain GD [auth O] mmCIF format, chain GE [auth S] mmCIF format, chain HE [auth S] mmCIF format, chain IA [auth A] mmCIF format, chain IC [auth M] mmCIF format, chain IE [auth S] mmCIF format, chain JA [auth A] mmCIF format, chain KA [auth A] mmCIF format, chain LA [auth A] mmCIF format, chain LB [auth F] mmCIF format, chain MA [auth A] mmCIF format, chain MB [auth F] mmCIF format, chain NA [auth A] mmCIF format, chain NB [auth F] mmCIF format, chain OA [auth A] mmCIF format, chain OB [auth F] mmCIF format, chain OE [auth W] mmCIF format, chain PE [auth W] mmCIF format, chain RC [auth N] mmCIF format, chain RD [auth P] mmCIF format, chain SC [auth N] mmCIF format, chain SD [auth P] mmCIF format, chain TA [auth B] mmCIF format, chain TB [auth G] mmCIF format, chain TC [auth N] mmCIF format, chain TD [auth P] mmCIF format, chain UA [auth B] mmCIF format, chain UC [auth N] mmCIF format, chain UD [auth P] mmCIF format, chain VC [auth N] mmCIF format, chain WC [auth N] mmCIF format, chain WD [auth P] mmCIF format, chain XC [auth N] mmCIF format, chain XE [auth Y] mmCIF format, chain YC [auth N] mmCIF format, chain ZC [auth N] mmCIF format, chain ZD [auth Q]	AD [auth N] BD [auth N] BE [auth R] CD [auth N] DE [auth S] AD [auth N], BD [auth N], BE [auth R], CD [auth N], DE [auth S], EE [auth S], FB [auth C], FC [auth L], FD [auth O], FE [auth S], GB [auth C], GC [auth L], GD [auth O], GE [auth S], HE [auth S], IA [auth A], IC [auth M], IE [auth S], JA [auth A], KA [auth A], LA [auth A], LB [auth F], MA [auth A], MB [auth F], NA [auth A], NB [auth F], OA [auth A], OB [auth F], OE [auth W], PE [auth W], RC [auth N], RD [auth P], SC [auth N], SD [auth P], TA [auth B], TB [auth G], TC [auth N], TD [auth P], UA [auth B], UC [auth N], UD [auth P], VC [auth N], WC [auth N], WD [auth P], XC [auth N], XE [auth Y], YC [auth N], ZC [auth N], ZD [auth Q]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain AD [auth N] Focus chain BD [auth N] Focus chain BE [auth R] Focus chain CD [auth N] Focus chain DE [auth S] Focus chain EE [auth S] Focus chain FB [auth C] Focus chain FC [auth L] Focus chain FD [auth O] Focus chain FE [auth S] Focus chain GB [auth C] Focus chain GC [auth L] Focus chain GD [auth O] Focus chain GE [auth S] Focus chain HE [auth S] Focus chain IA [auth A] Focus chain IC [auth M] Focus chain IE [auth S] Focus chain JA [auth A] Focus chain KA [auth A] Focus chain LA [auth A] Focus chain LB [auth F] Focus chain MA [auth A] Focus chain MB [auth F] Focus chain NA [auth A] Focus chain NB [auth F] Focus chain OA [auth A] Focus chain OB [auth F] Focus chain OE [auth W] Focus chain PE [auth W] Focus chain RC [auth N] Focus chain RD [auth P] Focus chain SC [auth N] Focus chain SD [auth P] Focus chain TA [auth B] Focus chain TB [auth G] Focus chain TC [auth N] Focus chain TD [auth P] Focus chain UA [auth B] Focus chain UC [auth N] Focus chain UD [auth P] Focus chain VC [auth N] Focus chain WC [auth N] Focus chain WD [auth P] Focus chain XC [auth N] Focus chain XE [auth Y] Focus chain YC [auth N] Focus chain ZC [auth N] Focus chain ZD [auth Q] Interactions & Density Focus chain AD [auth N] Focus chain BD [auth N] Focus chain BE [auth R] Focus chain CD [auth N] Focus chain DE [auth S] Focus chain EE [auth S] Focus chain FB [auth C] Focus chain FC [auth L] Focus chain FD [auth O] Focus chain FE [auth S] Focus chain GB [auth C] Focus chain GC [auth L] Focus chain GD [auth O] Focus chain GE [auth S] Focus chain HE [auth S] Focus chain IA [auth A] Focus chain IC [auth M] Focus chain IE [auth S] Focus chain JA [auth A] Focus chain KA [auth A] Focus chain LA [auth A] Focus chain LB [auth F] Focus chain MA [auth A] Focus chain MB [auth F] Focus chain NA [auth A] Focus chain NB [auth F] Focus chain OA [auth A] Focus chain OB [auth F] Focus chain OE [auth W] Focus chain PE [auth W] Focus chain RC [auth N] Focus chain RD [auth P] Focus chain SC [auth N] Focus chain SD [auth P] Focus chain TA [auth B] Focus chain TB [auth G] Focus chain TC [auth N] Focus chain TD [auth P] Focus chain UA [auth B] Focus chain UC [auth N] Focus chain UD [auth P] Focus chain VC [auth N] Focus chain WC [auth N] Focus chain WD [auth P] Focus chain XC [auth N] Focus chain XE [auth Y] Focus chain YC [auth N] Focus chain ZC [auth N] Focus chain ZD [auth Q]
PER Query on PER Download Ideal Coordinates CCD File SDF format, chain FA [auth A] SDF format, chain OC [auth N] MOL2 format, chain FA [auth A] MOL2 format, chain OC [auth N] mmCIF format, chain FA [auth A] mmCIF format, chain OC [auth N]	FA [auth A], OC [auth N]	PEROXIDE ION O₂ ANAIPYUSIMHBEL-UHFFFAOYSA-N		Interactions Focus chain FA [auth A] Focus chain OC [auth N] Interactions & Density Focus chain FA [auth A] Focus chain OC [auth N]
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain DA [auth A] SDF format, chain MC [auth N] MOL2 format, chain DA [auth A] MOL2 format, chain MC [auth N] mmCIF format, chain DA [auth A] mmCIF format, chain MC [auth N]	DA [auth A], MC [auth N]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain DA [auth A] Focus chain MC [auth N] Interactions & Density Focus chain DA [auth A] Focus chain MC [auth N]
NA Query on NA Download Ideal Coordinates CCD File SDF format, chain EA [auth A] SDF format, chain KD [auth P] SDF format, chain NC [auth N] SDF format, chain WA [auth C] MOL2 format, chain EA [auth A] MOL2 format, chain KD [auth P] MOL2 format, chain NC [auth N] MOL2 format, chain WA [auth C] mmCIF format, chain EA [auth A] mmCIF format, chain KD [auth P] mmCIF format, chain NC [auth N] mmCIF format, chain WA [auth C]	EA [auth A], KD [auth P], NC [auth N], WA [auth C]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Interactions Focus chain EA [auth A] Focus chain KD [auth P] Focus chain NC [auth N] Focus chain WA [auth C] Interactions & Density Focus chain EA [auth A] Focus chain KD [auth P] Focus chain NC [auth N] Focus chain WA [auth C]

Modified Residues 3 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
FME Query on FME	A, N	L-PEPTIDE LINKING	C₆ H₁₁ N O₃ S		MET
TPO Query on TPO	G, T	L-PEPTIDE LINKING	C₄ H₁₀ N O₆ P		THR
SAC Query on SAC	I, V	L-PEPTIDE LINKING	C₅ H₉ N O₄		SER