7Y39 | pdb_00007y39

Ubiquitin-like domain of human ZFAND1

• PDB DOI: https://doi.org/10.2210/pdb7Y39/pdb

• Classification: PROTEIN BINDING
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-06-10 Released: 2022-08-10 
• Deposition Author(s): Lai, C.H., Ko, K.T., Fan, P.J., Yu, T.A., Chang, C.F., Draczkowski, P., Hsu, S.T.D.
• Funding Organization(s): Ministry of Science and Technology (MoST, Taiwan)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.88 Å
• R-Value Free: 
  0.229 (Depositor), 0.230 (DCC) 
• R-Value Work: 
  0.205 (Depositor), 0.205 (DCC) 
• R-Value Observed: 
  0.207 (Depositor) 

Starting Model: in silico

Literature

Structural Insight into ZFAND1 and p97 Interaction

Lai, C.H., Ko, K.T., Fan, P.J., Yu, T.A., Chang, C.F., Draczkowski, P., Hsu, S.T.D.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 31.36 kDa 
• Atom Count: 2,170 
• Modeled Residue Count: 263 
• Deposited Residue Count: 278 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
AN1-type zinc finger protein 1	A, B	139	Homo sapiens	Mutation(s): 0  Gene Names: ZFAND1
UniProt & NIH Common Fund Data Resources
Find proteins for Q8TCF1 (Homo sapiens) Explore Q8TCF1  Go to UniProtKB:  Q8TCF1
PHAROS:  Q8TCF1 GTEx:  ENSG00000104231

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.88 Å
• R-Value Free:  0.229 (Depositor), 0.230 (DCC) 
• R-Value Work:  0.205 (Depositor), 0.205 (DCC) 
• R-Value Observed: 0.207 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.158	α = 90
b = 34.284	β = 91.97
c = 64.522	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data collection
HKL-2000	data scaling
PHASER	phasing
PDB_EXTRACT	data extraction

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2022-08-10 
Deposition Author(s): Lai, C.H., Ko, K.T., Fan, P.J., Yu, T.A., Chang, C.F., Draczkowski, P., Hsu, S.T.D.

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Funding Organization	Location	Grant Number
Ministry of Science and Technology (MoST, Taiwan)	Taiwan	110-2113-M-001-050-MY3
Ministry of Science and Technology (MoST, Taiwan)	Taiwan	110-2811-M-001-583-
Ministry of Science and Technology (MoST, Taiwan)	Taiwan	110-2311-B-001-013-MY3

Revision History  

• Version 1.0: 2022-08-10
  Type: Initial release
  
• Version 1.1: 2024-04-03
  Changes: Data collection, Refinement description