7Y1Q | pdb_00007y1q

5.0 angstrom cryo-EM structure of transmembrane regions of mouse Basigin/MCT1 in complex with antibody 6E7F1

PDB DOI: https://doi.org/10.2210/pdb7Y1Q/pdb
EM Map EMD-33570: EMDB EMDataResource

Classification: TRANSPORT PROTEIN
Organism(s): Mus musculus
Expression System: Homo sapiens
Mutation(s): No
Membrane Protein: Yes PDBTM

Deposited: 2022-06-08 Released: 2023-06-14
Deposition Author(s): Zhang, H., Yang, X., Xue, Y., Huang, Y., Mo, X., Zhang, H., Li, N., Gao, N., Li, X., Wang, S., Gao, Y., Liao, J.
Funding Organization(s): Ministry of Science and Technology (MoST, China)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 5.03 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 7Y1Q

This is version 1.1 of the entry. See complete history.

Literature

Allosteric modulation of monocarboxylate transporters 1 and 4 by targeting their chaperon Basigin-2

Zhang, H., Yang, X., Xue, Y., Huang, Y., Mo, Y., Zhang, H., Li, N., Gao, N., Li, X., Wang, S., Gao, Y., Liao, J.

To be published.

Macromolecule Content

Total Structure Weight: 83.02 kDa
Atom Count: 1,996
Modeled Residue Count: 408
Deposited Residue Count: 766
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Monocarboxylate transporter 1	A	493	Mus musculus	Mutation(s): 0 Gene Names: Slc16a1, Mct1 Membrane Entity: Yes
UniProt
Find proteins for P53986 (Mus musculus) Explore P53986 Go to UniProtKB: P53986
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P53986
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Isoform 2 of Basigin	B	273	Mus musculus	Mutation(s): 0 Gene Names: Bsg Membrane Entity: Yes
UniProt
Find proteins for P18572 (Mus musculus) Explore P18572 Go to UniProtKB: P18572
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P18572
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 5.03 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.19.2
RECONSTRUCTION	cryoSPARC	v3.3.2

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-06-14

Deposition Author(s):

Funding Organization	Location	Grant Number
Ministry of Science and Technology (MoST, China)	China	2017YFA0504800
Ministry of Science and Technology (MoST, China)	China	2018ZX09711003-003-003

Revision History (Full details and data files)

Version 1.0: 2023-06-14
Type: Initial release
Version 1.1: 2024-07-03
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.