7Y0E

Crystal structure of TMPRSS2 in complex with Camostat

PDB DOI: https://doi.org/10.2210/pdb7Y0E/pdb

Classification: HYDROLASE
Organism(s): Homo sapiens
Expression System: Spodoptera frugiperda
Mutation(s): Yes

Deposited: 2022-06-04 Released: 2023-12-06
Deposition Author(s): Wang, H., Duan, Y., Liu, X., Sun, L., Yang, H.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.39 Å
R-Value Free: 0.239
R-Value Work: 0.195
R-Value Observed: 0.198

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of TMPRSS2 in complex with Camostat

Wang, H., Duan, Y., Liu, X., Sun, L., Yang, H.

To be published.

Macromolecule Content

Total Structure Weight: 88.8 kDa
Atom Count: 5,796
Modelled Residue Count: 740
Deposited Residue Count: 790
Unique protein chains: 2

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transmembrane protease serine 2 catalytic chain	A, C [auth B]	146	Homo sapiens	Mutation(s): 5 Gene Names: TMPRSS2, PRSS10
UniProt & NIH Common Fund Data Resources
Find proteins for O15393 (Homo sapiens) Explore O15393 Go to UniProtKB: O15393
PHAROS: O15393 GTEx: ENSG00000184012
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O15393
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Transmembrane protease serine 2 catalytic chain	B [auth C], D	249	Homo sapiens	Mutation(s): 0 Gene Names: TMPRSS2, PRSS10
UniProt & NIH Common Fund Data Resources
Find proteins for O15393 (Homo sapiens) Explore O15393 Go to UniProtKB: O15393
PHAROS: O15393 GTEx: ENSG00000184012
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O15393
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAG Query on NAG Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain H [auth B] MOL2 format, chain E [auth A] MOL2 format, chain H [auth B]	E [auth A], H [auth B]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain E [auth A] Focus chain H [auth B] Interactions & Density Focus chain E [auth A] Focus chain H [auth B]
GBS (Subject of Investigation/LOI) Query on GBS Download Ideal Coordinates CCD File SDF format, chain G [auth C] SDF format, chain J [auth D] MOL2 format, chain G [auth C] MOL2 format, chain J [auth D]	G [auth C], J [auth D]	4-carbamimidamidobenzoic acid C₈ H₉ N₃ O₂ SXTSBZBQQRIYCU-UHFFFAOYSA-N		Interactions Focus chain G [auth C] Focus chain J [auth D] Interactions & Density Focus chain G [auth C] Focus chain J [auth D]
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain K [auth D] MOL2 format, chain K [auth D]	K [auth D]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain K [auth D] Interactions & Density Focus chain K [auth D]
CA Query on CA Download Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain I [auth B] MOL2 format, chain F [auth A] MOL2 format, chain I [auth B]	F [auth A], I [auth B]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain F [auth A] Focus chain I [auth B] Interactions & Density Focus chain F [auth A] Focus chain I [auth B]