7XYM | pdb_00007xym

The pre-fusion structure of Thogotovirus dhori envelope glycoprotein

PDB DOI: https://doi.org/10.2210/pdb7XYM/pdb
EM Map EMD-33522: EMDB EMDataResource

Classification: STRUCTURAL PROTEIN
Organism(s): Thogotovirus dhoriense
Expression System: Homo sapiens
Mutation(s): Yes

Deposited: 2022-06-01 Released: 2023-07-12
Deposition Author(s): Shan, Y.Y., Zhang, M.F., Pei, D.Q.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 7XYM

This is version 1.1 of the entry. See complete history.

Literature

Pre- and post-fusion class III glycoprotein structures reveal viral fusion mechanism

Shan, Y.Y., Zhang, M.F., Pei, D.Q.

To be published.

Macromolecule Content

Total Structure Weight: 176.02 kDa
Atom Count: 11,436
Modeled Residue Count: 1,464
Deposited Residue Count: 1,560
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Envelope glycoprotein	A, B, C	520	Thogotovirus dhoriense	Mutation(s): 3 Gene Names: P4
UniProt
Find proteins for P27427 (Dhori virus (strain Indian/1313/61)) Explore P27427 Go to UniProtKB: P27427
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P27427
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2023-07-12

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	2017YFA0504100

Revision History (Full details and data files)

Version 1.0: 2023-07-12
Type: Initial release
Version 1.1: 2024-10-09
Changes: Data collection, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.