7XOR | pdb_00007xor

Cryo-EM structure of occupied ring subunit 3 (OR3) of GroEL from GroEL-UGT1A double occupied ring complex

PDB DOI: https://doi.org/10.2210/pdb7XOR/pdb
EM Map EMD-33357: EMDB EMDataResource

Classification: CHAPERONE
Organism(s): Escherichia coli
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-05-01 Released: 2023-05-03
Deposition Author(s): Stapleton, K., Takagi, J., Mizohata, E.
Funding Organization(s): Japan Agency for Medical Research and Development (AMED), Japan Society for the Promotion of Science (JSPS), Japan Science and Technology, Ministry of Education, Culture, Sports, Science and Technology (Japan), New Energy and Industrial Technology Development Organization (NEDO)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 7XOR

This is version 1.2 of the entry. See complete history.

Literature

Unmasking GroEL: Structure, dynamics, and substrate binding revealed by single-particle cryo-EM

Stapleton, K.M., Mizobata, T., Miyazaki, N., Takatsuji, T., Kato, T., Iwasaki, K., Standley, D.M., Kawamura, T., Nakane, T., Takagi, J., Mizohata, E.

To be published.

Macromolecule Content

Total Structure Weight: 57.26 kDa
Atom Count: 3,855
Modeled Residue Count: 524
Deposited Residue Count: 547
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Chaperonin GroEL	A [auth K]	547	Escherichia coli	Mutation(s): 0 Gene Names: groEL, groL, mopA, b4143, JW4103 EC: 5.6.1.7
UniProt
Find proteins for P0A6F5 (Escherichia coli (strain K12)) Explore P0A6F5 Go to UniProtKB: P0A6F5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0A6F5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.19.2-4158
RECONSTRUCTION	RELION	3.1

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2023-05-03

Deposition Author(s):

Funding Organization	Location	Grant Number
Japan Agency for Medical Research and Development (AMED)	Japan	21am0101075
Japan Agency for Medical Research and Development (AMED)	Japan	22ama121025j0001
Japan Agency for Medical Research and Development (AMED)	Japan	JP21am0101066
Japan Society for the Promotion of Science (JSPS)	Japan	JP19K06513
Japan Science and Technology	Japan	JPMJPR17GB
Ministry of Education, Culture, Sports, Science and Technology (Japan)	Japan	19H05780
New Energy and Industrial Technology Development Organization (NEDO)	Japan	JPNP18016

Revision History (Full details and data files)

Version 1.0: 2023-05-03
Type: Initial release
Version 1.1: 2024-07-03
Changes: Data collection
Version 1.2: 2024-11-13
Changes: Data collection, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.