7XF2 | pdb_00007xf2

Cry-EM structure of vp51 in white spot syndrome virus capsid

• PDB DOI: https://doi.org/10.2210/pdb7XF2/pdb
• EM Map EMD-33168: EMDB EMDataResource

• Classification: VIRAL PROTEIN
• Organism(s): White spot syndrome virus
• Mutation(s): No 


• Deposited: 2022-03-31 Released: 2023-04-05 
• Deposition Author(s): Shan, H., Shen, Q.T.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.73 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

structure of vp51 in white spot syndrome virus capsid

Hong, S., Shen, Q.T.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 103.93 kDa 
• Atom Count: 6,591 
• Modeled Residue Count: 840 
• Deposited Residue Count: 932 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein	A, B	466	White spot syndrome virus	Mutation(s): 0
UniProt
Find proteins for K7WK08 (White spot syndrome virus) Explore K7WK08  Go to UniProtKB:  K7WK08

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.73 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-04-05 
Deposition Author(s): Shan, H., Shen, Q.T.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	31870743

Revision History  

• Version 1.0: 2023-04-05
  Type: Initial release
  
• Version 1.1: 2024-07-03
  Changes: Data collection
• Version 1.2: 2025-07-02
  Changes: Data collection, Structure summary