Download MendeleyCrystal structure of the mouse interleukin-9
Kim, J.W., Lee, J.-O., Park, S.M.To be published.
7XCB
Crystal structure of the mouse interleukin-9
- PDB DOI: https://doi.org/10.2210/pdb7XCB/pdb
- Classification: CYTOKINE
- Organism(s): Mus musculus
- Expression System: Trichoplusia ni
- Mutation(s): No
- Deposited: 2022-03-23 Released: 2023-03-29
- Funding Organization(s): National Research Foundation (NRF, Korea)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.40 Å
- R-Value Free: 0.290
- R-Value Work: 0.241
- R-Value Observed: 0.244
Starting Model: in silico
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This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Interleukin-9 | 120 | Mus musculus | Mutation(s): 0 Gene Names: Il9 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P15247 (Mus musculus) Explore P15247 Go to UniProtKB: P15247 | |||||
IMPC: MGI:96563 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P15247 | ||||
Glycosylation | |||||
| Glycosylation Sites: 2 | Go to GlyGen: P15247-1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG (Subject of Investigation/LOI) Query on NAG | B [auth A], C [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.40 Å
- R-Value Free: 0.290
- R-Value Work: 0.241
- R-Value Observed: 0.244
- Space Group: P 63 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 95.5 | α = 90 |
| b = 95.5 | β = 90 |
| c = 105.71 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XDS | data scaling |
| PHENIX | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-03-29 Deposition Author(s): Kim, J.W., Lee, J.-O., Park, S.M.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Research Foundation (NRF, Korea) | Korea, Republic Of | 2019M3E5D6066058, 2017M3A9F6029753 |
Revision History (Full details and data files)
- Version 1.0: 2023-03-29
Type: Initial release - Version 1.1: 2024-04-03
Changes: Data collection, Refinement description
