Structural insights of 4-Hydrophenylpyruvate dioxygenase inhibition by structurally diverse small molecules
Dong, J., Dong, J., Yu, X.H., Yan, Y.C., Nan, J.X., He, B., Ye, B.Q., Yang, W.C., Lin, H.Y., Yang, G.F.(2022) Adv Agrochem
Experimental Data Snapshot
Starting Model: experimental
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(2022) Adv Agrochem
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
4-hydroxyphenylpyruvate dioxygenase | 417 | Arabidopsis thaliana | Mutation(s): 0 Gene Names: HPD, PDS1, At1g06570, F12K11.9 EC: 1.13.11.27 | ![]() | |
UniProt | |||||
Find proteins for P93836 (Arabidopsis thaliana) Explore P93836 Go to UniProtKB: P93836 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P93836 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
9R6 Query on 9R6 | C [auth A] | (1R,2S,3R)-1-cyclopropyl-2-(iminomethyl)-3-[2-methylsulfonyl-4-(trifluoromethyl)phenyl]propane-1,3-diol C15 H18 F3 N O4 S GOAAJVFYZPNLHO-MAVPCDBQSA-N | |||
MPD Query on MPD | D [auth A] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N | |||
CO Query on CO | B [auth A] | COBALT (II) ION Co XLJKHNWPARRRJB-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 76.66 | α = 90 |
b = 83.852 | β = 100.17 |
c = 62.052 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Science Foundation (NSF, China) | China | -- |