Crystal structure of human SIRT5 in complex with diazirine inhibitor 9
Li, G.-B., Deng, J.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
NAD-dependent protein deacylase sirtuin-5, mitochondrial | 277 | Homo sapiens | Mutation(s): 0  Gene Names: SIRT5, SIR2L5 EC: 2.3.1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9NXA8 (Homo sapiens) Explore Q9NXA8  Go to UniProtKB:  Q9NXA8 | |||||
PHAROS:  Q9NXA8 GTEx:  ENSG00000124523  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9NXA8 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
8VG (Subject of Investigation/LOI) Query on 8VG | B [auth A] | 5-[[(5~{S})-6-[[(1~{S})-1-(4-hydroxyphenyl)-2-oxidanylidene-2-(prop-2-ynylamino)ethyl]amino]-6-oxidanylidene-5-[[4-[3-(trifluoromethyl)-1,2-diazirin-3-yl]phenyl]carbonylamino]hexyl]amino]-5-sulfanylidene-pentanoic acid C31 H33 F3 N6 O6 S BSPJSERNTAGWAV-OZXSUGGESA-N | |||
PEG (Subject of Investigation/LOI) Query on PEG | C [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
ZN Query on ZN | D [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 41.332 | α = 90 |
b = 65.034 | β = 93.58 |
c = 55.658 | γ = 90 |
Software Name | Purpose |
---|---|
HKL-2000 | data reduction |
SCALEPACK | data scaling |
PHASER | phasing |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
Funding Organization | Location | Grant Number |
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National Natural Science Foundation of China (NSFC) | China | 82122065, 82073698 |