Structure of an avian influenza H5 hemagglutinin from the influenza virus A/Equine/Guangxi/25/2010(H5N1) and A/Equine/Guangxi/68/2010(H5N1)
Wei, X., Yang, X., Chen, Q., Meng, G.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Hemagglutinin | A, B [auth C], C [auth E] | 321 | Influenza A virus | Mutation(s): 0  Gene Names: HA | ![]() |
UniProt | |||||
Find proteins for D1LPE3 (Influenza A virus) Explore D1LPE3  Go to UniProtKB:  D1LPE3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | D1LPE3 | ||||
Glycosylation | |||||
Glycosylation Sites: 5 | |||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Hemagglutinin | D [auth B], E [auth D], F | 169 | Influenza A virus | Mutation(s): 0  Gene Names: HA | ![]() |
UniProt | |||||
Find proteins for A0A8K1XY81 (Influenza A virus) Explore A0A8K1XY81  Go to UniProtKB:  A0A8K1XY81 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A8K1XY81 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | G, I, J, K, M G, I, J, K, M, N, O, Q, R | 2 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G42666HT GlyCosmos:  G42666HT GlyGen:  G42666HT |
Entity ID: 4 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | H, L, P | 3 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G15407YE GlyCosmos:  G15407YE GlyGen:  G15407YE |
Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | S [auth A], T [auth C], U [auth E] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 215.425 | α = 90 |
b = 99.092 | β = 95.03 |
c = 102.06 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
PHENIX | phasing |
Funding Organization | Location | Grant Number |
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Not funded | -- |