7WC2

Cryo-EM structure of alphavirus, Getah virus

• PDB DOI: https://doi.org/10.2210/pdb7WC2/pdb
• EM Map EMD-32412: EMDB EMDataResource

• Classification: VIRUS
• Organism(s): Getah virus
• Mutation(s): Yes 


• Deposited: 2021-12-18 Released: 2022-11-02 
• Deposition Author(s): Wang, M., Sun, Z.Z., Wang, J.F.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.50 Å
• Aggregation State: CELL 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Implications for the pathogenicity and antigenicity of alpha viruses revealed by a 3.5 angstrom Cryo-EM structure of Getah virus

Wang, M., Sun, Z.Z., Wang, J.F.

To be published.

Biological Assembly 1  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Hetero 480-mer - A240B240 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 387.08 kDa 
• Atom Count: 27,108 
• Modelled Residue Count: 3,440 
• Deposited Residue Count: 3,440 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Spike glycoprotein E1	A, C [auth D], E [auth G], G [auth J]	438	Getah virus	Mutation(s): 0
UniProt
Find proteins for Q5Y388 (Getah virus) Explore Q5Y388  Go to UniProtKB:  Q5Y388

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Spike glycoprotein E2	B, D [auth E], F [auth H], H [auth K]	422	Getah virus	Mutation(s): 2
UniProt
Find proteins for Q5Y388 (Getah virus) Explore Q5Y388  Go to UniProtKB:  Q5Y388

Oligosaccharides

Help

Entity ID: 3
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	I [auth a], J [auth b], K [auth c], L [auth d], M [auth e], N [auth f], O [auth g], P [auth h], Q [auth i], R [auth j], S [auth k], T [auth l]	5		N-Glycosylation
Glycosylation Resources
GlyTouCan:  G22768VO GlyCosmos:  G22768VO GlyGen:  G22768VO

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.50 Å
• Aggregation State: CELL 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-11-02 
Deposition Author(s): Wang, M., Sun, Z.Z., Wang, J.F.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2022-11-02
  Type: Initial release