7WAP | pdb_00007wap

Mevo lectin mutant D134A

PDB DOI: https://doi.org/10.2210/pdb7WAP/pdb

Classification: SUGAR BINDING PROTEIN
Organism(s): Methanococcus voltae A3
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2021-12-14 Released: 2022-12-21
Deposition Author(s): Sivaji, N., Vijayan, M.
Funding Organization(s): Science and Engineering Research Board (SERB)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.10 Å
R-Value Free:
0.275 (Depositor), 0.274 (DCC)
R-Value Work:
0.228 (Depositor), 0.232 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Mevo lectin mutant D134A

Sivaji, N., Vijayan, M.

To be published.

Macromolecule Content

Total Structure Weight: 220.36 kDa
Atom Count: 14,478
Modeled Residue Count: 1,950
Deposited Residue Count: 2,030
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Mevo lectin	A [auth B] B [auth G] C [auth A] D E A [auth B], B [auth G], C [auth A], D, E, F, G [auth C], H, I, J, K, L, M, N	145	Methanococcus voltae A3	Mutation(s): 1 Gene Names: Mvol_0737
UniProt
Find proteins for D7DTD6 (Methanococcus voltae (strain ATCC BAA-1334 / A3)) Explore D7DTD6 Go to UniProtKB: D7DTD6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	D7DTD6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.10 Å
R-Value Free: 0.275 (Depositor), 0.274 (DCC)
R-Value Work: 0.228 (Depositor), 0.232 (DCC)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 46.81	α = 90
b = 169.26	β = 91.4
c = 160.94	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
iMOSFLM	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2022-12-21

Deposition Author(s):

Funding Organization	Location	Grant Number
Science and Engineering Research Board (SERB)	India	--

Revision History (Full details and data files)

Version 1.0: 2022-12-21
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.