7W0I | pdb_00007w0i

Crystal structure of threonine aldolase from Mycobacterium vanbaalenii

PDB DOI: https://doi.org/10.2210/pdb7W0I/pdb

Classification: TRANSFERASE
Organism(s): Mycolicibacterium vanbaalenii PYR-1
Expression System: Escherichia coli K-12
Mutation(s): No

Deposited: 2021-11-18 Released: 2022-11-23
Deposition Author(s): Wu, B.
Funding Organization(s): Chinese Academy of Sciences

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.75 Å
R-Value Free:
0.190 (Depositor), 0.191 (DCC)
R-Value Work:
0.171 (Depositor), 0.172 (DCC)
R-Value Observed:
0.171 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of threonine aldolase from Mycobacterium vanbaalenii

Wu, B.

To be published.

Macromolecule Content

Total Structure Weight: 145.76 kDa
Atom Count: 11,304
Modeled Residue Count: 1,336
Deposited Residue Count: 1,372
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
L-threonine aldolase	A, B, C, D	343	Mycolicibacterium vanbaalenii PYR-1	Mutation(s): 0 Gene Names: Mvan_1179 EC: 4.1.2.48 (PDB Primary Data), 4.1.2.5 (UniProt)
UniProt
Find proteins for A1T4B4 (Mycolicibacterium vanbaalenii (strain DSM 7251 / JCM 13017 / BCRC 16820 / KCTC 9966 / NRRL B-24157 / PYR-1)) Explore A1T4B4 Go to UniProtKB: A1T4B4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A1T4B4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.75 Å
R-Value Free: 0.190 (Depositor), 0.191 (DCC)
R-Value Work: 0.171 (Depositor), 0.172 (DCC)
R-Value Observed: 0.171 (Depositor)

Space Group: P 2 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 96.001	α = 90
b = 102.432	β = 90
c = 150.352	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2022-11-23

Deposition Author(s):

Funding Organization	Location	Grant Number
Chinese Academy of Sciences	China	--

Revision History (Full details and data files)

Version 1.0: 2022-11-23
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.