7VXN | pdb_00007vxn

Coxsackievirus B3 Empty particle at pH7.4 (VP3-234Q)

PDB DOI: https://doi.org/10.2210/pdb7VXN/pdb
EM Map EMD-32185: EMDB EMDataResource

Classification: VIRUS
Organism(s): Coxsackievirus B3
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2021-11-12 Released: 2022-11-16
Deposition Author(s): Wang, Q.L., Liu, C.C.
Funding Organization(s): National Science Foundation (NSF, China)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 7VXN

This is version 1.1 of the entry. See complete history.

Literature

Coxsackievirus B3 Empty particle at pH7.4 (VP3-234Q)

Wang, Q.L., Liu, C.C.

To be published.

Macromolecule Content

Total Structure Weight: 86.69 kDa
Atom Count: 5,167
Modeled Residue Count: 662
Deposited Residue Count: 785
Unique protein chains: 3

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein VP1	A	284	Coxsackievirus B3	Mutation(s): 0
UniProt
Find proteins for P03313 (Coxsackievirus B3 (strain Nancy)) Explore P03313 Go to UniProtKB: P03313
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P03313
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein VP2	B	263	Coxsackievirus B3	Mutation(s): 0
UniProt
Find proteins for P03313 (Coxsackievirus B3 (strain Nancy)) Explore P03313 Go to UniProtKB: P03313
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P03313
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein VP3	C	238	Coxsackievirus B3	Mutation(s): 0
UniProt
Find proteins for P03313 (Coxsackievirus B3 (strain Nancy)) Explore P03313 Go to UniProtKB: P03313
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P03313
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.18
RECONSTRUCTION	RELION	3.0.8

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2022-11-16

Deposition Author(s):

Funding Organization	Location	Grant Number
National Science Foundation (NSF, China)	China	82072289

Revision History (Full details and data files)

Version 1.0: 2022-11-16
Type: Initial release
Version 1.1: 2024-06-26
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.