7VVS | pdb_00007vvs

PLL9 induced TmFtn nanocage

PDB DOI: https://doi.org/10.2210/pdb7VVS/pdb

Classification: PROTEIN BINDING
Organism(s): Thermotoga maritima MSB8
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-11-08 Released: 2022-11-09
Deposition Author(s): Zhao, G., Zhang, X.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.227 (Depositor), 0.228 (DCC)
R-Value Work:
0.180 (Depositor), 0.182 (DCC)
R-Value Observed:
0.181 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

PLL9 induced TmFtn nanocage

Zhao, G., Zhang, X.

To be published.

Macromolecule Content

Total Structure Weight: 156.11 kDa
Atom Count: 11,749
Modeled Residue Count: 1,311
Deposited Residue Count: 1,312
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ferritin	A [auth H] B [auth A] C [auth B] D [auth C] E [auth D] A [auth H], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G]	164	Thermotoga maritima MSB8	Mutation(s): 0 Gene Names: TM_1128 EC: 1.16.3.2
UniProt
Find proteins for Q9X0L2 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9X0L2 Go to UniProtKB: Q9X0L2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9X0L2
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FE Query on FE Download:Ideal Coordinates CCD File SDF format, chain X [auth G] SDF format, chain W [auth G] SDF format, chain V [auth F] SDF format, chain U [auth F] SDF format, chain T [auth E] SDF format, chain S [auth E] SDF format, chain R [auth D] SDF format, chain Q [auth D] SDF format, chain P [auth C] SDF format, chain O [auth C] SDF format, chain N [auth B] SDF format, chain M [auth B] SDF format, chain L [auth A] SDF format, chain K [auth A] SDF format, chain J [auth H] SDF format, chain I [auth H] MOL2 format, chain X [auth G] MOL2 format, chain W [auth G] MOL2 format, chain V [auth F] MOL2 format, chain U [auth F] MOL2 format, chain T [auth E] MOL2 format, chain S [auth E] MOL2 format, chain R [auth D] MOL2 format, chain Q [auth D] MOL2 format, chain P [auth C] MOL2 format, chain O [auth C] MOL2 format, chain N [auth B] MOL2 format, chain M [auth B] MOL2 format, chain L [auth A] MOL2 format, chain K [auth A] MOL2 format, chain J [auth H] MOL2 format, chain I [auth H] mmCIF format, chain X [auth G] mmCIF format, chain W [auth G] mmCIF format, chain V [auth F] mmCIF format, chain U [auth F] mmCIF format, chain T [auth E] mmCIF format, chain S [auth E] mmCIF format, chain R [auth D] mmCIF format, chain Q [auth D] mmCIF format, chain P [auth C] mmCIF format, chain O [auth C] mmCIF format, chain N [auth B] mmCIF format, chain M [auth B] mmCIF format, chain L [auth A] mmCIF format, chain K [auth A] mmCIF format, chain J [auth H] mmCIF format, chain I [auth H]	I [auth H] J [auth H] K [auth A] L [auth A] M [auth B] I [auth H], J [auth H], K [auth A], L [auth A], M [auth B], N [auth B], O [auth C], P [auth C], Q [auth D], R [auth D], S [auth E], T [auth E], U [auth F], V [auth F], W [auth G], X [auth G]	FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N		Interactions Focus chain I [auth H] Focus chain J [auth H] Focus chain K [auth A] Focus chain L [auth A] Focus chain M [auth B] Focus chain N [auth B] Focus chain O [auth C] Focus chain P [auth C] Focus chain Q [auth D] Focus chain R [auth D] Focus chain S [auth E] Focus chain T [auth E] Focus chain U [auth F] Focus chain V [auth F] Focus chain W [auth G] Focus chain X [auth G] Interactions & Density Focus chain I [auth H] Focus chain J [auth H] Focus chain K [auth A] Focus chain L [auth A] Focus chain M [auth B] Focus chain N [auth B] Focus chain O [auth C] Focus chain P [auth C] Focus chain Q [auth D] Focus chain R [auth D] Focus chain S [auth E] Focus chain T [auth E] Focus chain U [auth F] Focus chain V [auth F] Focus chain W [auth G] Focus chain X [auth G]