7VRC | pdb_00007vrc

Structure of the Yeast SNF11/SNF2 complex

PDB DOI: https://doi.org/10.2210/pdb7VRC/pdb

Classification: NUCLEAR PROTEIN
Organism(s): Saccharomyces cerevisiae S288C, Saccharomyces cerevisiae
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-10-22 Released: 2022-05-25
Deposition Author(s): Cheng, Y., Chen, F., Zhou, H., Long, J.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free:
0.260 (Depositor), 0.258 (DCC)
R-Value Work:
0.194 (Depositor), 0.196 (DCC)
R-Value Observed:
0.197 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 7VRC

This is version 1.1 of the entry. See complete history.

Literature

Structure of the Yeast SNF11/SNF2 complex

Cheng, Y., Chen, F., Zhou, H., Long, J.

To be published.

Macromolecule Content

Total Structure Weight: 51.61 kDa
Atom Count: 2,704
Modeled Residue Count: 316
Deposited Residue Count: 460
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcription regulatory protein SNF11	A, C	169	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: SNF11, YDR073W, D4411
UniProt
Find proteins for P38956 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38956 Go to UniProtKB: P38956
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P38956
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
XXYS1_4_G0032080.mRNA.1.CDS.1	B, D	61	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: PACBIOSEQ_LOCUS5717 EC: 3.6.4
UniProt
Find proteins for P22082 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P22082 Go to UniProtKB: P22082
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P22082
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free: 0.260 (Depositor), 0.258 (DCC)
R-Value Work: 0.194 (Depositor), 0.196 (DCC)
R-Value Observed: 0.197 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 47.445	α = 90
b = 63.539	β = 90
c = 118.466	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
PHENIX	phasing

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2022-05-25

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	31870750
National Natural Science Foundation of China (NSFC)	China	31670758

Revision History (Full details and data files)

Version 1.0: 2022-05-25
Type: Initial release
Version 1.1: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.