7VQ2

Structure of Apo-hsTRPM2 channel TM domain


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.68 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

Structural and functional basis of the selectivity filter as a gate in human TRPM2 channel.

Yu, X.Xie, Y.Zhang, X.Ma, C.Liu, L.Zhen, W.Xu, L.Zhang, J.Liang, Y.Zhao, L.Gao, X.Yu, P.Luo, J.Jiang, L.H.Nie, Y.Yang, F.Guo, J.Yang, W.

(2021) Cell Rep 37: 110025-110025

  • DOI: https://doi.org/10.1016/j.celrep.2021.110025
  • Primary Citation of Related Structures:  
    7VQ1, 7VQ2

  • PubMed Abstract: 

    Transient receptor potential melastatin 2 (TRPM2), a Ca 2+ -permeable cation channel, is gated by intracellular adenosine diphosphate ribose (ADPR), Ca 2+ , warm temperature, and oxidative stress. It is critically involved in physiological and pathological processes ranging from inflammation to stroke to neurodegeneration. At present, the channel's gating and ion permeation mechanisms, such as the location and identity of the selectivity filter, remain ambiguous. Here, we report the cryo-electron microscopy (cryo-EM) structure of human TRPM2 in nanodisc in the ligand-free state. Cryo-EM map-guided computational modeling and patch-clamp recording further identify a quadruple-residue motif as the ion selectivity filter, which adopts a restrictive conformation in the closed state and acts as a gate, profoundly contrasting with its widely open conformation in the Nematostella vectensis TRPM2. Our study reveals the gating of human TRPM2 by the filter and demonstrates the feasibility of using cryo-EM in conjunction with computational modeling and functional studies to garner structural information for intrinsically dynamic but functionally important domains.


  • Organizational Affiliation

    Departments of Biophysics and Neurosurgery, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang 310058, P. R. China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transient receptor potential cation channel subfamily M member 2
A, B, C, D
354Homo sapiensMutation(s): 0 
Gene Names: TRPM2EREG1KNP3LTRPC2TRPC7
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for O94759 (Homo sapiens)
Explore O94759 
Go to UniProtKB:  O94759
PHAROS:  O94759
GTEx:  ENSG00000142185 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO94759
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.68 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31872796
National Natural Science Foundation of China (NSFC)China81371302

Revision History  (Full details and data files)

  • Version 1.0: 2021-12-22
    Type: Initial release