7VMA

The X-ray crystallographic structure of amylo-alpha-1,6-glucosidase from Thermococcus gammatolerans STB12


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.328 
  • R-Value Work: 0.244 
  • R-Value Observed: 0.248 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

The X-ray Crystallographic Structure of Amylo-alpha-1,6-glucosidase from Thermococcus gannatilerans STB12

Li, Z.F.Ban, X.F.Wang, Y.M.Li, C.M.Gu, Z.B.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Amylo-alpha-1,6-glucosidase, putative archaeal type glycogen debranching enzyme (Gde)
A, B
620Thermococcus gammatolerans EJ3Mutation(s): 0 
Gene Names: gdeTGAM_1568
EC: 3.2.1.33
UniProt
Find proteins for C5A758 (Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3))
Explore C5A758 
Go to UniProtKB:  C5A758
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupC5A758
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.328 
  • R-Value Work: 0.244 
  • R-Value Observed: 0.248 
  • Space Group: I 41
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 108.087α = 90
b = 108.087β = 90
c = 225.199γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHENIXphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31722040
National Natural Science Foundation of China (NSFC)China31771935
National Natural Science Foundation of China (NSFC)China31901628

Revision History  (Full details and data files)

  • Version 1.0: 2022-10-12
    Type: Initial release
  • Version 1.1: 2024-04-03
    Changes: Data collection, Refinement description