Crystal structure of the collagenase unit of a Vibrio collagenase from Vibrio harveyi VHJR7
Wang, Y., Cao, H.Y., Peng, M.To be published.
Experimental Data Snapshot
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
collagenase | 613 | Vibrio harveyi VHJR7 | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for A0A8B3DGT3 (Vibrio harveyi) Explore A0A8B3DGT3  Go to UniProtKB:  A0A8B3DGT3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A8B3DGT3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Peptide P1 | 14 | Vibrio harveyi VHJR7 | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for A0A454B2U5 (Vibrio harveyi) Explore A0A454B2U5  Go to UniProtKB:  A0A454B2U5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A454B2U5 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Peptide P2 | 12 | Vibrio harveyi VHJR7 | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for A0A454B2U5 (Vibrio harveyi) Explore A0A454B2U5  Go to UniProtKB:  A0A454B2U5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A454B2U5 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | D [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
CA Query on CA | E [auth A], F [auth A], G [auth A], H [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 74.641 | α = 90 |
b = 50.573 | β = 104.98 |
c = 90.968 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
PDB_EXTRACT | data extraction |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Science Foundation (NSF, China) | China | U2006205 |
National Science Foundation (NSF, China) | China | U1706207 |