7VIV

Crystal structure of the I73R from African Swine Fever Virus

PDB DOI: https://doi.org/10.2210/pdb7VIV/pdb

Classification: VIRAL PROTEIN
Organism(s): African swine fever virus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-09-28 Released: 2022-09-07
Deposition Author(s): Sun, L.F., Wu, Y.K.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.223
R-Value Work: 0.185
R-Value Observed: 0.187

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural insight into African Swine Fever Virus I73R protein reveals it is a Z-DNA binding protein

Sun, L.F.

To be published.

Macromolecule Content

Total Structure Weight: 16.81 kDa
Atom Count: 1,244
Modelled Residue Count: 144
Deposited Residue Count: 144
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
I73R	A, B	72	African swine fever virus	Mutation(s): 0 Gene Names: I73R CDS, I73R, ASFV-Georgia_4-163, ASFV_Kyiv_2016_131_00219
UniProt
Find proteins for A0A2X0RU36 (African swine fever virus) Explore A0A2X0RU36 Go to UniProtKB: A0A2X0RU36
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A2X0RU36
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.223
R-Value Work: 0.185
R-Value Observed: 0.187
Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 89.36	α = 90
b = 89.36	β = 90
c = 46.16	γ = 120

Software Package:

Software Name	Purpose
Aimless	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2022-09-07

Deposition Author(s):

Funding Organization	Location	Grant Number
Other government	China	Z0210509

Revision History (Full details and data files)

Version 1.0: 2022-09-07
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.