7V5K | pdb_00007v5k

MERS S ectodomain trimer in complex with neutralizing antibody 0722 (state 1)

• PDB DOI: https://doi.org/10.2210/pdb7V5K/pdb
• EM Map EMD-31726: EMDB EMDataResource

• Classification: PROTEIN BINDING
• Organism(s): Human betacoronavirus 2c EMC/2012, Homo sapiens
• Expression System: Trichoplusia ni, Homo sapiens
• Mutation(s): No 


• Deposited: 2021-08-17 Released: 2022-08-24 
• Deposition Author(s): Wang, X., Zhao, J., Wang, Z., Zeng, J., Zhang, S., Wang, Y.
• Funding Organization(s): Not funded

---

Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.80 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

MERS S ectodomain trimer in complex with neutralizing antibody 0722 (state 1)

Wang, X., Zhao, J., Wang, Z., Zeng, J., Zhang, S., Wang, Y.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 9-mer - A3B3C3 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 9-mer - A6B2C1 Local Symmetry: Cyclic - C3  (Explore in 3D)
Local Stoichiometry: Hetero 6-mer - B3C3 

Local Symmetry: Cyclic - C3  (Explore in 3D)
Local Stoichiometry: Hetero 6-mer - B3C3 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 532.32 kDa 
• Atom Count: 36,369 
• Modeled Residue Count: 4,725 
• Deposited Residue Count: 4,869 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Spike glycoprotein	A, B, C	1,189	Human betacoronavirus 2c EMC/2012	Mutation(s): 0
UniProt
Find proteins for K9N5Q8 (Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012)) Explore K9N5Q8  Go to UniProtKB:  K9N5Q8

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
0722 L	D, F, H	212	Homo sapiens	Mutation(s): 0

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
0722 H	E, G, I	222	Homo sapiens	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.80 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2022-08-24 
Deposition Author(s): Wang, X., Zhao, J., Wang, Z., Zeng, J., Zhang, S., Wang, Y.

---

Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2022-08-24
  Type: Initial release
  
• Version 1.1: 2024-11-13
  Changes: Data collection, Structure summary