7V3L | pdb_00007v3l

MERS S ectodomain trimer in complex with neutralizing antibody 6516

• PDB DOI: https://doi.org/10.2210/pdb7V3L/pdb
• EM Map EMD-31683: EMDB EMDataResource

• Classification: PROTEIN BINDING
• Organism(s): Human betacoronavirus 2c EMC/2012, Homo sapiens
• Expression System: Trichoplusia ni, Homo sapiens
• Mutation(s): No 


• Deposited: 2021-08-10 Released: 2022-08-17 
• Deposition Author(s): Wang, X., Zhao, J., Wang, Z., Wang, Y., Zeng, J.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.47 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

MERS S ectodomain trimer in complex with neutralizing antibody 6516

Wang, X., Zhao, J., Wang, Z., Wang, Y., Zeng, J.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Hetero 9-mer - A3B3C3 Pseudo Symmetry: Cyclic - C3  (Explore in 3D)
Pseudo Stoichiometry: Hetero 9-mer - A6B3 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 569.07 kDa 
• Atom Count: 36,238 
• Modeled Residue Count: 4,710 
• Deposited Residue Count: 5,193 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Spike glycoprotein	A, B, C	1,290	Human betacoronavirus 2c EMC/2012	Mutation(s): 0
UniProt
Find proteins for K0BRG7 (Human betacoronavirus 2c (isolate EMC/2012)) Explore K0BRG7  Go to UniProtKB:  K0BRG7

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
antibody H	D, F, H	226	Homo sapiens	Mutation(s): 0

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
antibody L	E, G, I	215	Homo sapiens	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.47 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2022-08-17 
Deposition Author(s): Wang, X., Zhao, J., Wang, Z., Wang, Y., Zeng, J.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2022-08-17
  Type: Initial release
  
• Version 1.1: 2024-10-30
  Changes: Data collection, Structure summary