Download MendeleyStructure of V-ATPase with NCOA7B
Abbas, Y.M., Rubinstein, J.L.To be published.
7UZK
Rat Kidney V1 complex lacking subunit H with SidK and NCOA7B, State 1
- PDB DOI: https://doi.org/10.2210/pdb7UZK/pdb
- EM Map EMD-26914: EMDB EMDataResource
- Classification: PROTON TRANSPORT
- Organism(s): Rattus norvegicus, Legionella pneumophila
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2022-05-09 Released: 2023-11-22
- Funding Organization(s): Canadian Institutes of Health Research (CIHR)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.00 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
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(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ATPase H+-transporting V1 subunit A | 617 | Rattus norvegicus | Mutation(s): 0 EC: 7.1.2.2 |  | |
UniProt | |||||
Find proteins for D4A133 (Rattus norvegicus) Explore D4A133 Go to UniProtKB: D4A133 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D4A133 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| V-type proton ATPase subunit B, brain isoform | 511 | Rattus norvegicus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P62815 (Rattus norvegicus) Explore P62815 Go to UniProtKB: P62815 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P62815 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| V-type proton ATPase subunit C 1 | 382 | Rattus norvegicus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q5FVI6 (Rattus norvegicus) Explore Q5FVI6 Go to UniProtKB: Q5FVI6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5FVI6 | ||||
Sequence AnnotationsExpand | |||||
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(by identity cutoff) | 3D Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ATPase H+-transporting V1 subunit D | 247 | Rattus norvegicus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q6P503 (Rattus norvegicus) Explore Q6P503 Go to UniProtKB: Q6P503 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6P503 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| V-type proton ATPase subunit E 1 | 226 | Rattus norvegicus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q6PCU2 (Rattus norvegicus) Explore Q6PCU2 Go to UniProtKB: Q6PCU2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6PCU2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| V-type proton ATPase subunit F | 119 | Rattus norvegicus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P50408 (Rattus norvegicus) Explore P50408 Go to UniProtKB: P50408 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P50408 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| V-type proton ATPase subunit G | 118 | Rattus norvegicus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for B2GUV5 (Rattus norvegicus) Explore B2GUV5 Go to UniProtKB: B2GUV5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B2GUV5 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Effector SidK | P [auth Q], Q [auth R], R [auth S] | 280 | Legionella pneumophila | Mutation(s): 0 Gene Names: lpg0968 |  |
UniProt | |||||
Find proteins for Q5ZWW6 (Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)) Explore Q5ZWW6 Go to UniProtKB: Q5ZWW6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5ZWW6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Nuclear receptor coactivator 7B | S [auth T] | 221 | Rattus norvegicus | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ADP (Subject of Investigation/LOI) Query on ADP | T [auth C] | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N |  | ||
| MG (Subject of Investigation/LOI) Query on MG | U [auth C] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.00 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
Entry History & Funding Information
Deposition Data
- Released Date: 2023-11-22 Deposition Author(s): Abbas, Y.M., Rubinstein, J.L.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Canadian Institutes of Health Research (CIHR) | Canada | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-11-22
Type: Initial release
