A Universal Mechanism for Poly-glutamylation
Bashiri, G., Bramley, W., Bulloch, E., Stutely, S., Middleditch, M., Young, P., Naqvi, M., Harris, P., Baker, E.N., Squire, C.J.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Coenzyme F420:L-glutamate ligase | 251 | Archaeoglobus fulgidus DSM 4304 | Mutation(s): 0  Gene Names: cofE, AF_2256 EC: 6.3.2.31 (PDB Primary Data), 6.3.2.34 (PDB Primary Data) | ||
UniProt | |||||
Find proteins for O28028 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)) Explore O28028  Go to UniProtKB:  O28028 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O28028 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
F4I (Subject of Investigation/LOI) Query on F4I | C [auth A] | (2~{S})-2-[[(2~{S})-2-[oxidanyl-[(2~{R},3~{S},4~{S})-2,3,4-tris(oxidanyl)-5-[2,4,8-tris(oxidanylidene)-1,9-dihydropyrimido[4,5-b]quinolin-10-yl]pentoxy]phosphoryl]oxypropanoyl]amino]pentanedioic acid C24 H29 N4 O15 P RSZBQCOVWYZBFJ-LADHFWMSSA-N | |||
GDP (Subject of Investigation/LOI) Query on GDP | B [auth A] | GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N | |||
MN Query on MN | D [auth A], E [auth A] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N | |||
NA Query on NA | F [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 69.082 | α = 90 |
b = 69.082 | β = 90 |
c = 92.352 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
Aimless | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Not funded | -- |