Structural Characterization of a Covalent Conjugate between Pixantrone and an Abasic Site in DNA
Kellum Jr., A.H., Pallan, P.S., Terrell, J.T., Fu, Y., Noh, B., Rizzo, C.J., Egli, M., Stone, M.P.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 1 | |||||
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Molecule | Chains | Length | Organism | Image | |
Pixantrone AP conjugate-modified DNA | 12 | synthetic construct | |||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
EDO Query on EDO | C [auth A], D [auth A], E [auth A], F [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 95.921 | α = 90 |
b = 95.921 | β = 90 |
c = 73.118 | γ = 120 |
Software Name | Purpose |
---|---|
HKL-2000 | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
HKL-2000 | data reduction |
AutoSol | phasing |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Cancer Institute (NIH/NCI) | United States | P01 CA-160032 |