7U01

Structure of CD148 fibronectin type III domain 2

• PDB DOI: https://doi.org/10.2210/pdb7U01/pdb

• Classification: SIGNALING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-02-17 Released: 2023-02-22 
• Deposition Author(s): Zhou, D., Zhu, J.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 0.260 
• R-Value Work: 0.214 
• R-Value Observed: 0.217 

Literature

Structure of CD148 fibronectin type III domain 1 and 2

Zhou, D., Zhu, J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors and generated by PISA (software)

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 4 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 67.83 kDa 
• Atom Count: 3,267 
• Modelled Residue Count: 418 
• Deposited Residue Count: 636 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Receptor-type tyrosine-protein phosphatase eta	A, B, C, D	159	Homo sapiens	Mutation(s): 0  Gene Names: PTPRJ, DEP1 EC: 3.1.3.48
UniProt & NIH Common Fund Data Resources
Find proteins for Q12913 (Homo sapiens) Explore Q12913  Go to UniProtKB:  Q12913
PHAROS:  Q12913 GTEx:  ENSG00000149177

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B, C, D	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 0.260 
• R-Value Work: 0.214 
• R-Value Observed: 0.217 
• Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 155.068	α = 90
b = 155.068	β = 90
c = 47.837	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
AutoSol	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-02-22 
Deposition Author(s): Zhou, D., Zhu, J.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM137143
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)	United States	HL131836

Revision History  

• Version 1.0: 2023-02-22
  Type: Initial release
  
• Version 1.1: 2024-10-23
  Changes: Data collection, Structure summary