7T6E

Cryo-EM of NBD-ffsy filaments (class 1)

  • Classification: PROTEIN FIBRIL
  • Organism(s): synthetic construct
  • Mutation(s): No 

  • Deposited: 2021-12-13 Released: 2023-01-25 
  • Deposition Author(s): Wang, F., Guo, J., Xu, B., Egelman, E.H.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Cancer Institute (NIH/NCI), National Science Foundation (NSF, United States)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report

Currently 7T6E does not have a validation slider image.


This is version 1.4 of the entry. See complete history


Literature

Cell spheroid creation by transcytotic intercellular gelation.

Guo, J.Wang, F.Huang, Y.He, H.Tan, W.Yi, M.Egelman, E.H.Xu, B.

(2023) Nat Nanotechnol 18: 1094-1104

  • DOI: https://doi.org/10.1038/s41565-023-01401-7
  • Primary Citation of Related Structures:  
    7T6E, 8DST, 8FOF

  • PubMed Abstract: 

    Cell spheroids bridge the discontinuity between in vitro systems and in vivo animal models. However, inducing cell spheroids by nanomaterials remains an inefficient and poorly understood process. Here we use cryogenic electron microscopy to determine the atomic structure of helical nanofibres self-assembled from enzyme-responsive D-peptides and fluorescent imaging to show that the transcytosis of D-peptides induces intercellular nanofibres/gels that potentially interact with fibronectin to enable cell spheroid formation. Specifically, D-phosphopeptides, being protease resistant, undergo endocytosis and endosomal dephosphorylation to generate helical nanofibres. On secretion to the cell surface, these nanofibres form intercellular gels that act as artificial matrices and facilitate the fibrillogenesis of fibronectins to induce cell spheroids. No spheroid formation occurs without endo- or exocytosis, phosphate triggers or shape switching of the peptide assemblies. This study-coupling transcytosis and morphological transformation of peptide assemblies-demonstrates a potential approach for regenerative medicine and tissue engineering.


  • Organizational Affiliation

    Department of Chemistry, Brandeis University, Waltham, MA, USA.


Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
NBD-ffsy peptide5synthetic constructMutation(s): 0 
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

Structure Validation

View Full Validation Report

Currently 7T6E does not have a validation slider image.



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM122510
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesK99GM138756
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesCA142746
National Science Foundation (NSF, United States)United StatesDMR-2011846

Revision History  (Full details and data files)

  • Version 1.0: 2023-01-25
    Type: Initial release
  • Version 1.1: 2023-05-31
    Changes: Database references
  • Version 1.2: 2023-06-07
    Changes: Database references
  • Version 1.3: 2023-09-27
    Changes: Data collection, Database references
  • Version 1.4: 2024-10-16
    Changes: Data collection, Structure summary