7SP2 | pdb_00007sp2

Structure of PLS A-domain (residues 391-656; 513-518 deletion mutant) from Staphylococcus aureus

PDB DOI: https://doi.org/10.2210/pdb7SP2/pdb

Classification: CELL ADHESION
Organism(s): Staphylococcus aureus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-11-02 Released: 2022-11-09
Deposition Author(s): Clark, L., Whelan, F., Atkin, K.E., Brentnall, A.S., Dodson, E.J., Turkenburg, J.P., Potts, J.R.
Funding Organization(s): Biotechnology and Biological Sciences Research Council (BBSRC), British Heart Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.75 Å
R-Value Free:
0.242 (Depositor), 0.258 (DCC)
R-Value Work:
0.201 (Depositor)
R-Value Observed:
0.203 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Structure of PLS A-domain (residues 391-65) from Staphylococcus aureus

Clark, L., Whelan, F., Atkin, K.E., Brentnall, A.S., Dodson, E.J., Turkenburg, J.P., Potts, J.R.

Not Published

Macromolecule Content

Total Structure Weight: 28.64 kDa
Atom Count: 1,980
Modeled Residue Count: 258
Deposited Residue Count: 264
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Plasmin Sensitive Protein Pls	A	264	Staphylococcus aureus	Mutation(s): 0 Gene Names: pls
UniProt
Find proteins for P80544 (Staphylococcus aureus) Explore P80544 Go to UniProtKB: P80544
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P80544
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CA (Subject of Investigation/LOI) Query on CA Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.75 Å
R-Value Free: 0.242 (Depositor), 0.258 (DCC)
R-Value Work: 0.201 (Depositor)
R-Value Observed: 0.203 (Depositor)

Space Group: P 2₁ 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 97.21	α = 90
b = 97.21	β = 90
c = 97.21	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
xia2	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2022-11-09

Deposition Author(s):

Brentnall, A.S.

Turkenburg, J.P.

Funding Organization	Location	Grant Number
Biotechnology and Biological Sciences Research Council (BBSRC)	United Kingdom	BB/J005029/
British Heart Foundation	United Kingdom	FS/12/36/29588
British Heart Foundation	United Kingdom	PG/17/19/32862

Revision History (Full details and data files)

Version 1.0: 2022-11-09
Type: Initial release
Version 1.1: 2023-05-31
Changes: Database references
Version 1.2: 2023-10-25
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.