Stabilizing DNA-Protein Co-Crystals via Intra-Crystal Chemical Ligation of the DNA
Ward, A.R., Dmytriw, S., Vajapayajula, A., Snow, C.D.(2022) Crystals (Basel) 12
Experimental Data Snapshot
Starting Model: experimental
View more details
wwPDB Validation   3D Report Full Report
(2022) Crystals (Basel) 12
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
RepB family plasmid replication initiator protein | 263 | Escherichia coli | Mutation(s): 1  Gene Names:  repE, RepE, repE_1, repE_2, A9P13_27925, ACN81_13795, AKG29_00005, AM270_25025, AM446_00510, AM465_27515... | ![]() | |
UniProt | |||||
Find proteins for P03856 (Escherichia coli (strain K12)) Explore P03856  Go to UniProtKB:  P03856 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P03856 | ||||
Sequence AnnotationsExpand | |||||
|
Find similar proteins by: Sequence | 3D Structure
Entity ID: 4 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Unidentified polymer | D [auth G] | 3 | Escherichia coli | Mutation(s): 0  | ![]() |
Sequence AnnotationsExpand | |||||
|
Find similar proteins by: Sequence | 3D Structure
Entity ID: 5 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Unidentified polymer | E [auth D] | 4 | Escherichia coli | Mutation(s): 0  | ![]() |
Sequence AnnotationsExpand | |||||
|
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(P*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*G)-3') | 21 | Escherichia coli | ![]() | ||
Sequence AnnotationsExpand | |||||
|
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(P*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*G)-3') | 21 | Escherichia coli | ![]() | ||
Sequence AnnotationsExpand | |||||
|
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MG Query on MG | F [auth C], G [auth C], H [auth C] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 109.161 | α = 90 |
b = 83.051 | β = 123.948 |
c = 74.349 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
Coot | model building |
XDS | data reduction |
XSCALE | data scaling |
SCALA | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
National Science Foundation (NSF, United States) | United States | 2003748 |