7S86 | pdb_00007s86

Crystal structure of hydrophobin SC16, C2221

PDB DOI: https://doi.org/10.2210/pdb7S86/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Schizophyllum commune
Expression System: Escherichia coli
Mutation(s): No
Membrane Protein: Yes OPM

Deposited: 2021-09-17 Released: 2021-12-29
Deposition Author(s): Vergunst, K.L., Langelaan, D.N.
Funding Organization(s): Natural Sciences and Engineering Research Council (NSERC, Canada)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.252 (Depositor), 0.250 (DCC)
R-Value Work:
0.204 (Depositor), 0.200 (DCC)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

The N-terminal tail of the hydrophobin SC16 is not required for rodlet formation

Vergunst, K.L., Langelaan, D.N.

(2022) Sci Rep 12: 366

DOI: https://doi.org/10.1038/s41598-021-04223-6

Macromolecule Content

Total Structure Weight: 10.25 kDa
Atom Count: 657
Modeled Residue Count: 83
Deposited Residue Count: 99
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hydrophobin	A	99	Schizophyllum commune	Mutation(s): 0 Gene Names: HYD1, SCHCODRAFT_58269 Membrane Entity: Yes
UniProt
Find proteins for D8QCG9 (Schizophyllum commune (strain H4-8 / FGSC 9210)) Explore D8QCG9 Go to UniProtKB: D8QCG9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	D8QCG9
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain B [auth A] MOL2 format, chain C [auth A] MOL2 format, chain B [auth A] mmCIF format, chain C [auth A] mmCIF format, chain B [auth A]	B [auth A], C [auth A]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A] Interactions & Density Focus chain B [auth A] Focus chain C [auth A]
NA Query on NA Download Ideal Coordinates CCD File SDF format, chain D [auth A] MOL2 format, chain D [auth A] mmCIF format, chain D [auth A]	D [auth A]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Interactions Focus chain D [auth A] Interactions & Density Focus chain D [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.252 (Depositor), 0.250 (DCC)
R-Value Work: 0.204 (Depositor), 0.200 (DCC)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.18	α = 90
b = 96.29	β = 90
c = 37.87	γ = 90

Software Package:

Software Name	Purpose
PROTEUM2	data collection
PROTEUM2	data reduction
pointless	data scaling
Aimless	data scaling
PHENIX	phasing
PHENIX	refinement
Coot	model building

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2021-12-29

Deposition Author(s):

Langelaan, D.N.

Funding Organization	Location	Grant Number
Natural Sciences and Engineering Research Council (NSERC, Canada)	Canada	--

Revision History (Full details and data files)

Version 1.0: 2021-12-29
Type: Initial release
Version 1.1: 2022-01-19
Changes: Database references
Version 1.2: 2023-10-18
Changes: Data collection, Refinement description
Version 1.3: 2024-10-09
Changes: Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.