7RRA | pdb_00007rra

Cryo-EM Structure of Nanodisc reconstituted ABCD1 in inward open conformation

PDB DOI: https://doi.org/10.2210/pdb7RRA/pdb
EM Map EMD-24657: EMDB EMDataResource

Classification: TRANSPORT PROTEIN
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No
Membrane Protein: Yes OPM PDBTM MemProtMD mpstruc

Deposited: 2021-08-09 Released: 2022-01-19
Deposition Author(s): Alam, A., Le, L.T.M., Thompson, J.R.
Funding Organization(s): Other private

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.40 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 7RRA

This is version 1.1 of the entry. See complete history.

Literature

Structures of the human peroxisomal fatty acid transporter ABCD1 in a lipid environment

Le, L.T.M., Thompson, J.R., Dang, P.X., Bhandari, J., Alam, A.

(2022) Commun Biol 5: 7

DOI: https://doi.org/10.1038/s42003-021-02970-w

Macromolecule Content

Total Structure Weight: 166.08 kDa
Atom Count: 9,608
Modeled Residue Count: 1,204
Deposited Residue Count: 1,490
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP-binding cassette sub-family D member 1	A [auth B], B [auth A]	745	Homo sapiens	Mutation(s): 0 Gene Names: ABCD1, ALD EC: 7.6.2.4 (PDB Primary Data), 3.1.2 (UniProt), 7.6.2 (UniProt) Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P33897 (Homo sapiens) Explore P33897 Go to UniProtKB: P33897
PHAROS: P33897 GTEx: ENSG00000101986
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P33897
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 4.40 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX
RECONSTRUCTION	RELION	3.1

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2022-01-19

Deposition Author(s):

Funding Organization	Location	Grant Number
Other private		--
Other private	United States	--

Revision History (Full details and data files)

Version 1.0: 2022-01-19
Type: Initial release
Version 1.1: 2024-06-05
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.