7RGN | pdb_00007rgn

Crystal structure of putative fructose-1,6-bisphosphate aldolase from Candida auris

• PDB DOI: https://doi.org/10.2210/pdb7RGN/pdb

• Classification: LYASE
• Organism(s): Candidozyma auris
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2021-07-15 Released: 2021-07-28 
• Deposition Author(s): Stogios, P.J., Evdokimova, E., Tan, K., Di Leo, R., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
• Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 
  0.238 (Depositor), 0.232 (DCC) 
• R-Value Work: 
  0.194 (Depositor), 0.192 (DCC) 
• R-Value Observed: 
  0.198 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of putative fructose-1,6-bisphosphate aldolase from Candida auris

Stogios, P.J.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 39.63 kDa 
• Atom Count: 2,784 
• Modeled Residue Count: 340 
• Deposited Residue Count: 357 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fructose-bisphosphate aldolase	A	357	Candidozyma auris	Mutation(s): 0  Gene Names: CAJCM15448_14580, CJI96_0004025, QG37_01471 EC: 4.1.2.13
UniProt
Find proteins for A0A2H0ZD48 (Candidozyma auris) Explore A0A2H0ZD48  Go to UniProtKB:  A0A2H0ZD48

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GOL	B [auth A]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N
ZN	D [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N
IPA	C [auth A]	ISOPROPYL ALCOHOL C3 H8 O KFZMGEQAYNKOFK-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free:  0.238 (Depositor), 0.232 (DCC) 
• R-Value Work:  0.194 (Depositor), 0.192 (DCC) 
• R-Value Observed: 0.198 (Depositor) 

Space Group: P 6₅ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 64.477	α = 90
b = 64.477	β = 90
c = 320.77	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHASER	phasing
PHENIX	model building
Coot	model building

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2021-07-28 
Deposition Author(s): Stogios, P.J., Evdokimova, E., Tan, K., Di Leo, R., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	HHSN272201700060C

Revision History  

• Version 1.0: 2021-07-28
  Type: Initial release
  
• Version 1.1: 2023-10-18
  Changes: Data collection, Database references, Refinement description