7RE6 | pdb_00007re6

Crystal Structure of the brown dog tick (Rhipicephalus sanguineus) Arginine Kinase in absence of substrate or ligands

PDB DOI: https://doi.org/10.2210/pdb7RE6/pdb

Classification: TRANSFERASE
Organism(s): Rhipicephalus sanguineus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-07-12 Released: 2021-11-17
Deposition Author(s): Gomez-Yanes, A.C., Garcia-Orozco, K.D., Lopez-Zavala, A.A., Sotelo-Mundo, R.R.
Funding Organization(s): Consejo Nacional de Ciencia y Tecnologia (CONACYT)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.53 Å
R-Value Free:
0.186 (Depositor), 0.188 (DCC)
R-Value Work:
0.155 (Depositor), 0.156 (DCC)
R-Value Observed:
0.157 (Depositor)

Starting Model: experimental
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Literature

The Arginine Kinase from the Tick Rhipicephalus sanguineus Is an Efficient Biocatalyst

Gomez-Yanes, A.C., Moreno-Cordova, E.N., Garcia-Orozco, K.D., Laino, A., Islas-Osuna, M.A., Lopez-Zavala, A.A., Valenzuela, J.G., Sotelo-Mundo, R.R.

(2022) Catalysts 12

DOI: https://doi.org/10.3390/catal12101178

Macromolecule Content

Total Structure Weight: 42.33 kDa
Atom Count: 3,135
Modeled Residue Count: 347
Deposited Residue Count: 374
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Arginine kinase	A	374	Rhipicephalus sanguineus	Mutation(s): 0 EC: 2.7.3.3
UniProt
Find proteins for A0A8X6EH17 (Rhipicephalus sanguineus) Explore A0A8X6EH17 Go to UniProtKB: A0A8X6EH17
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A8X6EH17
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.53 Å
R-Value Free: 0.186 (Depositor), 0.188 (DCC)
R-Value Work: 0.155 (Depositor), 0.156 (DCC)
R-Value Observed: 0.157 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 48.412	α = 90
b = 61.41	β = 96.557
c = 61.342	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PHENIX	refinement
XDS	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2021-11-17

Deposition Author(s):

Gomez-Yanes, A.C.

Garcia-Orozco, K.D.

Lopez-Zavala, A.A.

Sotelo-Mundo, R.R.

Funding Organization	Location	Grant Number
Consejo Nacional de Ciencia y Tecnologia (CONACYT)	Mexico	CF-2019-610264

Revision History (Full details and data files)

Version 1.0: 2021-11-17
Type: Initial release
Version 1.1: 2022-11-30
Changes: Database references
Version 1.2: 2023-10-25
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.