7QYY | pdb_00007qyy

Vanadium-dependent bromoperoxidase from Corallina pilulifera in complex with chloride

PDB DOI: https://doi.org/10.2210/pdb7QYY/pdb

Classification: OXIDOREDUCTASE
Organism(s): Corallina pilulifera
Expression System: Saccharomyces cerevisiae
Mutation(s): No

Deposited: 2022-01-29 Released: 2023-02-08
Deposition Author(s): Isupov, M.N., Mitchell, D., Littelchild, J.A., Garcia-Rodriguez, E.
Funding Organization(s): Biotechnology and Biological Sciences Research Council (BBSRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.193 (Depositor), 0.193 (DCC)
R-Value Work:
0.146 (Depositor), 0.146 (DCC)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

R396W mutant of the vanadium-dependent bromoperoxidase from Corallina pilulifera

Isupov, M.N., Mitchell, D., Littelchild, J.A., Garcia-Rodriguez, E.

To be published.

Macromolecule Content

Total Structure Weight: 269.06 kDa
Atom Count: 22,702
Modeled Residue Count: 2,388
Deposited Residue Count: 2,392
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Vanadium-dependent bromoperoxidase	A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD]	598	Corallina pilulifera	Mutation(s): 0 EC: 1.11.1.18
UniProt
Find proteins for O81959 (Corallina pilulifera) Explore O81959 Go to UniProtKB: O81959
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O81959
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 5 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PO4 (Subject of Investigation/LOI) Query on PO4 Download:Ideal Coordinates CCD File SDF format, chain E [auth AAA] SDF format, chain G [auth AAA] SDF format, chain HC [auth DDD] SDF format, chain IA [auth BBB] SDF format, chain IB [auth CCC] SDF format, chain JC [auth DDD] SDF format, chain KA [auth BBB] SDF format, chain KB [auth CCC] SDF format, chain Z [auth AAA] MOL2 format, chain E [auth AAA] MOL2 format, chain G [auth AAA] MOL2 format, chain HC [auth DDD] MOL2 format, chain IA [auth BBB] MOL2 format, chain IB [auth CCC] MOL2 format, chain JC [auth DDD] MOL2 format, chain KA [auth BBB] MOL2 format, chain KB [auth CCC] MOL2 format, chain Z [auth AAA] mmCIF format, chain E [auth AAA] mmCIF format, chain G [auth AAA] mmCIF format, chain HC [auth DDD] mmCIF format, chain IA [auth BBB] mmCIF format, chain IB [auth CCC] mmCIF format, chain JC [auth DDD] mmCIF format, chain KA [auth BBB] mmCIF format, chain KB [auth CCC] mmCIF format, chain Z [auth AAA]	E [auth AAA] G [auth AAA] HC [auth DDD] IA [auth BBB] IB [auth CCC] E [auth AAA], G [auth AAA], HC [auth DDD], IA [auth BBB], IB [auth CCC], JC [auth DDD], KA [auth BBB], KB [auth CCC], Z [auth AAA]	PHOSPHATE ION O₄ P NBIIXXVUZAFLBC-UHFFFAOYSA-K		Interactions Focus chain E [auth AAA] Focus chain G [auth AAA] Focus chain HC [auth DDD] Focus chain IA [auth BBB] Focus chain IB [auth CCC] Focus chain JC [auth DDD] Focus chain KA [auth BBB] Focus chain KB [auth CCC] Focus chain Z [auth AAA] Interactions & Density Focus chain E [auth AAA] Focus chain G [auth AAA] Focus chain HC [auth DDD] Focus chain IA [auth BBB] Focus chain IB [auth CCC] Focus chain JC [auth DDD] Focus chain KA [auth BBB] Focus chain KB [auth CCC] Focus chain Z [auth AAA]
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain AB [auth BBB] SDF format, chain AC [auth CCC] SDF format, chain BB [auth BBB] SDF format, chain BC [auth CCC] SDF format, chain GA [auth BBB] SDF format, chain GC [auth DDD] SDF format, chain H [auth AAA] SDF format, chain HA [auth BBB] SDF format, chain I [auth AAA] SDF format, chain J [auth AAA] SDF format, chain K [auth AAA] SDF format, chain KC [auth DDD] SDF format, chain L [auth AAA] SDF format, chain LA [auth BBB] SDF format, chain LB [auth CCC] SDF format, chain LC [auth DDD] SDF format, chain M [auth AAA] SDF format, chain MA [auth BBB] SDF format, chain MB [auth CCC] SDF format, chain MC [auth DDD] SDF format, chain N [auth AAA] SDF format, chain NA [auth BBB] SDF format, chain NB [auth CCC] SDF format, chain NC [auth DDD] SDF format, chain O [auth AAA] SDF format, chain OA [auth BBB] SDF format, chain OB [auth CCC] SDF format, chain OC [auth DDD] SDF format, chain P [auth AAA] SDF format, chain PA [auth BBB] SDF format, chain PB [auth CCC] SDF format, chain PC [auth DDD] SDF format, chain Q [auth AAA] SDF format, chain QA [auth BBB] SDF format, chain QB [auth CCC] SDF format, chain QC [auth DDD] SDF format, chain R [auth AAA] SDF format, chain RA [auth BBB] SDF format, chain RB [auth CCC] SDF format, chain RC [auth DDD] SDF format, chain S [auth AAA] SDF format, chain SA [auth BBB] SDF format, chain SB [auth CCC] SDF format, chain SC [auth DDD] SDF format, chain T [auth AAA] SDF format, chain TA [auth BBB] SDF format, chain TB [auth CCC] SDF format, chain TC [auth DDD] SDF format, chain U [auth AAA] SDF format, chain UA [auth BBB] SDF format, chain UB [auth CCC] SDF format, chain V [auth AAA] SDF format, chain VA [auth BBB] SDF format, chain VB [auth CCC] SDF format, chain W [auth AAA] SDF format, chain WA [auth BBB] SDF format, chain WB [auth CCC] SDF format, chain X [auth AAA] SDF format, chain XA [auth BBB] SDF format, chain XB [auth CCC] SDF format, chain Y [auth AAA] SDF format, chain YA [auth BBB] SDF format, chain YB [auth CCC] SDF format, chain ZA [auth BBB] SDF format, chain ZB [auth CCC] MOL2 format, chain AB [auth BBB] MOL2 format, chain AC [auth CCC] MOL2 format, chain BB [auth BBB] MOL2 format, chain BC [auth CCC] MOL2 format, chain GA [auth BBB] MOL2 format, chain GC [auth DDD] MOL2 format, chain H [auth AAA] MOL2 format, chain HA [auth BBB] MOL2 format, chain I [auth AAA] MOL2 format, chain J [auth AAA] MOL2 format, chain K [auth AAA] MOL2 format, chain KC [auth DDD] MOL2 format, chain L [auth AAA] MOL2 format, chain LA [auth BBB] MOL2 format, chain LB [auth CCC] MOL2 format, chain LC [auth DDD] MOL2 format, chain M [auth AAA] MOL2 format, chain MA [auth BBB] MOL2 format, chain MB [auth CCC] MOL2 format, chain MC [auth DDD] MOL2 format, chain N [auth AAA] MOL2 format, chain NA [auth BBB] MOL2 format, chain NB [auth CCC] MOL2 format, chain NC [auth DDD] MOL2 format, chain O [auth AAA] MOL2 format, chain OA [auth BBB] MOL2 format, chain OB [auth CCC] MOL2 format, chain OC [auth DDD] MOL2 format, chain P [auth AAA] MOL2 format, chain PA [auth BBB] MOL2 format, chain PB [auth CCC] MOL2 format, chain PC [auth DDD] MOL2 format, chain Q [auth AAA] MOL2 format, chain QA [auth BBB] MOL2 format, chain QB [auth CCC] MOL2 format, chain QC [auth DDD] MOL2 format, chain R [auth AAA] MOL2 format, chain RA [auth BBB] MOL2 format, chain RB [auth CCC] MOL2 format, chain RC [auth DDD] MOL2 format, chain S [auth AAA] MOL2 format, chain SA [auth BBB] MOL2 format, chain SB [auth CCC] MOL2 format, chain SC [auth DDD] MOL2 format, chain T [auth AAA] MOL2 format, chain TA [auth BBB] MOL2 format, chain TB [auth CCC] MOL2 format, chain TC [auth DDD] MOL2 format, chain U [auth AAA] MOL2 format, chain UA [auth BBB] MOL2 format, chain UB [auth CCC] MOL2 format, chain V [auth AAA] MOL2 format, chain VA [auth BBB] MOL2 format, chain VB [auth CCC] MOL2 format, chain W [auth AAA] MOL2 format, chain WA [auth BBB] MOL2 format, chain WB [auth CCC] MOL2 format, chain X [auth AAA] MOL2 format, chain XA [auth BBB] MOL2 format, chain XB [auth CCC] MOL2 format, chain Y [auth AAA] MOL2 format, chain YA [auth BBB] MOL2 format, chain YB [auth CCC] MOL2 format, chain ZA [auth BBB] MOL2 format, chain ZB [auth CCC] mmCIF format, chain AB [auth BBB] mmCIF format, chain AC [auth CCC] mmCIF format, chain BB [auth BBB] mmCIF format, chain BC [auth CCC] mmCIF format, chain GA [auth BBB] mmCIF format, chain GC [auth DDD] mmCIF format, chain H [auth AAA] mmCIF format, chain HA [auth BBB] mmCIF format, chain I [auth AAA] mmCIF format, chain J [auth AAA] mmCIF format, chain K [auth AAA] mmCIF format, chain KC [auth DDD] mmCIF format, chain L [auth AAA] mmCIF format, chain LA [auth BBB] mmCIF format, chain LB [auth CCC] mmCIF format, chain LC [auth DDD] mmCIF format, chain M [auth AAA] mmCIF format, chain MA [auth BBB] mmCIF format, chain MB [auth CCC] mmCIF format, chain MC [auth DDD] mmCIF format, chain N [auth AAA] mmCIF format, chain NA [auth BBB] mmCIF format, chain NB [auth CCC] mmCIF format, chain NC [auth DDD] mmCIF format, chain O [auth AAA] mmCIF format, chain OA [auth BBB] mmCIF format, chain OB [auth CCC] mmCIF format, chain OC [auth DDD] mmCIF format, chain P [auth AAA] mmCIF format, chain PA [auth BBB] mmCIF format, chain PB [auth CCC] mmCIF format, chain PC [auth DDD] mmCIF format, chain Q [auth AAA] mmCIF format, chain QA [auth BBB] mmCIF format, chain QB [auth CCC] mmCIF format, chain QC [auth DDD] mmCIF format, chain R [auth AAA] mmCIF format, chain RA [auth BBB] mmCIF format, chain RB [auth CCC] mmCIF format, chain RC [auth DDD] mmCIF format, chain S [auth AAA] mmCIF format, chain SA [auth BBB] mmCIF format, chain SB [auth CCC] mmCIF format, chain SC [auth DDD] mmCIF format, chain T [auth AAA] mmCIF format, chain TA [auth BBB] mmCIF format, chain TB [auth CCC] mmCIF format, chain TC [auth DDD] mmCIF format, chain U [auth AAA] mmCIF format, chain UA [auth BBB] mmCIF format, chain UB [auth CCC] mmCIF format, chain V [auth AAA] mmCIF format, chain VA [auth BBB] mmCIF format, chain VB [auth CCC] mmCIF format, chain W [auth AAA] mmCIF format, chain WA [auth BBB] mmCIF format, chain WB [auth CCC] mmCIF format, chain X [auth AAA] mmCIF format, chain XA [auth BBB] mmCIF format, chain XB [auth CCC] mmCIF format, chain Y [auth AAA] mmCIF format, chain YA [auth BBB] mmCIF format, chain YB [auth CCC] mmCIF format, chain ZA [auth BBB] mmCIF format, chain ZB [auth CCC]	AB [auth BBB] AC [auth CCC] BB [auth BBB] BC [auth CCC] GA [auth BBB] AB [auth BBB], AC [auth CCC], BB [auth BBB], BC [auth CCC], GA [auth BBB], GC [auth DDD], H [auth AAA], HA [auth BBB], I [auth AAA], J [auth AAA], K [auth AAA], KC [auth DDD], L [auth AAA], LA [auth BBB], LB [auth CCC], LC [auth DDD], M [auth AAA], MA [auth BBB], MB [auth CCC], MC [auth DDD], N [auth AAA], NA [auth BBB], NB [auth CCC], NC [auth DDD], O [auth AAA], OA [auth BBB], OB [auth CCC], OC [auth DDD], P [auth AAA], PA [auth BBB], PB [auth CCC], PC [auth DDD], Q [auth AAA], QA [auth BBB], QB [auth CCC], QC [auth DDD], R [auth AAA], RA [auth BBB], RB [auth CCC], RC [auth DDD], S [auth AAA], SA [auth BBB], SB [auth CCC], SC [auth DDD], T [auth AAA], TA [auth BBB], TB [auth CCC], TC [auth DDD], U [auth AAA], UA [auth BBB], UB [auth CCC], V [auth AAA], VA [auth BBB], VB [auth CCC], W [auth AAA], WA [auth BBB], WB [auth CCC], X [auth AAA], XA [auth BBB], XB [auth CCC], Y [auth AAA], YA [auth BBB], YB [auth CCC], ZA [auth BBB], ZB [auth CCC]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain AB [auth BBB] Focus chain AC [auth CCC] Focus chain BB [auth BBB] Focus chain BC [auth CCC] Focus chain GA [auth BBB] Focus chain GC [auth DDD] Focus chain H [auth AAA] Focus chain HA [auth BBB] Focus chain I [auth AAA] Focus chain J [auth AAA] Focus chain K [auth AAA] Focus chain KC [auth DDD] Focus chain L [auth AAA] Focus chain LA [auth BBB] Focus chain LB [auth CCC] Focus chain LC [auth DDD] Focus chain M [auth AAA] Focus chain MA [auth BBB] Focus chain MB [auth CCC] Focus chain MC [auth DDD] Focus chain N [auth AAA] Focus chain NA [auth BBB] Focus chain NB [auth CCC] Focus chain NC [auth DDD] Focus chain O [auth AAA] Focus chain OA [auth BBB] Focus chain OB [auth CCC] Focus chain OC [auth DDD] Focus chain P [auth AAA] Focus chain PA [auth BBB] Focus chain PB [auth CCC] Focus chain PC [auth DDD] Focus chain Q [auth AAA] Focus chain QA [auth BBB] Focus chain QB [auth CCC] Focus chain QC [auth DDD] Focus chain R [auth AAA] Focus chain RA [auth BBB] Focus chain RB [auth CCC] Focus chain RC [auth DDD] Focus chain S [auth AAA] Focus chain SA [auth BBB] Focus chain SB [auth CCC] Focus chain SC [auth DDD] Focus chain T [auth AAA] Focus chain TA [auth BBB] Focus chain TB [auth CCC] Focus chain TC [auth DDD] Focus chain U [auth AAA] Focus chain UA [auth BBB] Focus chain UB [auth CCC] Focus chain V [auth AAA] Focus chain VA [auth BBB] Focus chain VB [auth CCC] Focus chain W [auth AAA] Focus chain WA [auth BBB] Focus chain WB [auth CCC] Focus chain X [auth AAA] Focus chain XA [auth BBB] Focus chain XB [auth CCC] Focus chain Y [auth AAA] Focus chain YA [auth BBB] Focus chain YB [auth CCC] Focus chain ZA [auth BBB] Focus chain ZB [auth CCC] Interactions & Density Focus chain AB [auth BBB] Focus chain AC [auth CCC] Focus chain BB [auth BBB] Focus chain BC [auth CCC] Focus chain GA [auth BBB] Focus chain GC [auth DDD] Focus chain H [auth AAA] Focus chain HA [auth BBB] Focus chain I [auth AAA] Focus chain J [auth AAA] Focus chain K [auth AAA] Focus chain KC [auth DDD] Focus chain L [auth AAA] Focus chain LA [auth BBB] Focus chain LB [auth CCC] Focus chain LC [auth DDD] Focus chain M [auth AAA] Focus chain MA [auth BBB] Focus chain MB [auth CCC] Focus chain MC [auth DDD] Focus chain N [auth AAA] Focus chain NA [auth BBB] Focus chain NB [auth CCC] Focus chain NC [auth DDD] Focus chain O [auth AAA] Focus chain OA [auth BBB] Focus chain OB [auth CCC] Focus chain OC [auth DDD] Focus chain P [auth AAA] Focus chain PA [auth BBB] Focus chain PB [auth CCC] Focus chain PC [auth DDD] Focus chain Q [auth AAA] Focus chain QA [auth BBB] Focus chain QB [auth CCC] Focus chain QC [auth DDD] Focus chain R [auth AAA] Focus chain RA [auth BBB] Focus chain RB [auth CCC] Focus chain RC [auth DDD] Focus chain S [auth AAA] Focus chain SA [auth BBB] Focus chain SB [auth CCC] Focus chain SC [auth DDD] Focus chain T [auth AAA] Focus chain TA [auth BBB] Focus chain TB [auth CCC] Focus chain TC [auth DDD] Focus chain U [auth AAA] Focus chain UA [auth BBB] Focus chain UB [auth CCC] Focus chain V [auth AAA] Focus chain VA [auth BBB] Focus chain VB [auth CCC] Focus chain W [auth AAA] Focus chain WA [auth BBB] Focus chain WB [auth CCC] Focus chain X [auth AAA] Focus chain XA [auth BBB] Focus chain XB [auth CCC] Focus chain Y [auth AAA] Focus chain YA [auth BBB] Focus chain YB [auth CCC] Focus chain ZA [auth BBB] Focus chain ZB [auth CCC]
CA (Subject of Investigation/LOI) Query on CA Download:Ideal Coordinates CCD File SDF format, chain F [auth AAA] SDF format, chain IC [auth DDD] SDF format, chain JA [auth BBB] SDF format, chain JB [auth CCC] MOL2 format, chain F [auth AAA] MOL2 format, chain IC [auth DDD] MOL2 format, chain JA [auth BBB] MOL2 format, chain JB [auth CCC] mmCIF format, chain F [auth AAA] mmCIF format, chain IC [auth DDD] mmCIF format, chain JA [auth BBB] mmCIF format, chain JB [auth CCC]	F [auth AAA], IC [auth DDD], JA [auth BBB], JB [auth CCC]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain F [auth AAA] Focus chain IC [auth DDD] Focus chain JA [auth BBB] Focus chain JB [auth CCC] Interactions & Density Focus chain F [auth AAA] Focus chain IC [auth DDD] Focus chain JA [auth BBB] Focus chain JB [auth CCC]
CL (Subject of Investigation/LOI) Query on CL Download:Ideal Coordinates CCD File SDF format, chain CA [auth AAA] SDF format, chain DA [auth AAA] SDF format, chain DB [auth BBB] SDF format, chain DC [auth CCC] SDF format, chain EA [auth AAA] SDF format, chain EB [auth BBB] SDF format, chain EC [auth CCC] SDF format, chain FA [auth AAA] SDF format, chain FB [auth BBB] SDF format, chain FC [auth CCC] SDF format, chain GB [auth BBB] SDF format, chain HB [auth BBB] SDF format, chain VC [auth DDD] SDF format, chain WC [auth DDD] SDF format, chain XC [auth DDD] SDF format, chain YC [auth DDD] MOL2 format, chain CA [auth AAA] MOL2 format, chain DA [auth AAA] MOL2 format, chain DB [auth BBB] MOL2 format, chain DC [auth CCC] MOL2 format, chain EA [auth AAA] MOL2 format, chain EB [auth BBB] MOL2 format, chain EC [auth CCC] MOL2 format, chain FA [auth AAA] MOL2 format, chain FB [auth BBB] MOL2 format, chain FC [auth CCC] MOL2 format, chain GB [auth BBB] MOL2 format, chain HB [auth BBB] MOL2 format, chain VC [auth DDD] MOL2 format, chain WC [auth DDD] MOL2 format, chain XC [auth DDD] MOL2 format, chain YC [auth DDD] mmCIF format, chain CA [auth AAA] mmCIF format, chain DA [auth AAA] mmCIF format, chain DB [auth BBB] mmCIF format, chain DC [auth CCC] mmCIF format, chain EA [auth AAA] mmCIF format, chain EB [auth BBB] mmCIF format, chain EC [auth CCC] mmCIF format, chain FA [auth AAA] mmCIF format, chain FB [auth BBB] mmCIF format, chain FC [auth CCC] mmCIF format, chain GB [auth BBB] mmCIF format, chain HB [auth BBB] mmCIF format, chain VC [auth DDD] mmCIF format, chain WC [auth DDD] mmCIF format, chain XC [auth DDD] mmCIF format, chain YC [auth DDD]	CA [auth AAA] DA [auth AAA] DB [auth BBB] DC [auth CCC] EA [auth AAA] CA [auth AAA], DA [auth AAA], DB [auth BBB], DC [auth CCC], EA [auth AAA], EB [auth BBB], EC [auth CCC], FA [auth AAA], FB [auth BBB], FC [auth CCC], GB [auth BBB], HB [auth BBB], VC [auth DDD], WC [auth DDD], XC [auth DDD], YC [auth DDD]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain CA [auth AAA] Focus chain DA [auth AAA] Focus chain DB [auth BBB] Focus chain DC [auth CCC] Focus chain EA [auth AAA] Focus chain EB [auth BBB] Focus chain EC [auth CCC] Focus chain FA [auth AAA] Focus chain FB [auth BBB] Focus chain FC [auth CCC] Focus chain GB [auth BBB] Focus chain HB [auth BBB] Focus chain VC [auth DDD] Focus chain WC [auth DDD] Focus chain XC [auth DDD] Focus chain YC [auth DDD] Interactions & Density Focus chain CA [auth AAA] Focus chain DA [auth AAA] Focus chain DB [auth BBB] Focus chain DC [auth CCC] Focus chain EA [auth AAA] Focus chain EB [auth BBB] Focus chain EC [auth CCC] Focus chain FA [auth AAA] Focus chain FB [auth BBB] Focus chain FC [auth CCC] Focus chain GB [auth BBB] Focus chain HB [auth BBB] Focus chain VC [auth DDD] Focus chain WC [auth DDD] Focus chain XC [auth DDD] Focus chain YC [auth DDD]
NA Query on NA Download:Ideal Coordinates CCD File SDF format, chain AA [auth AAA] SDF format, chain BA [auth AAA] SDF format, chain CB [auth BBB] SDF format, chain CC [auth CCC] SDF format, chain UC [auth DDD] MOL2 format, chain AA [auth AAA] MOL2 format, chain BA [auth AAA] MOL2 format, chain CB [auth BBB] MOL2 format, chain CC [auth CCC] MOL2 format, chain UC [auth DDD] mmCIF format, chain AA [auth AAA] mmCIF format, chain BA [auth AAA] mmCIF format, chain CB [auth BBB] mmCIF format, chain CC [auth CCC] mmCIF format, chain UC [auth DDD]	AA [auth AAA], BA [auth AAA], CB [auth BBB], CC [auth CCC], UC [auth DDD]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Interactions Focus chain AA [auth AAA] Focus chain BA [auth AAA] Focus chain CB [auth BBB] Focus chain CC [auth CCC] Focus chain UC [auth DDD] Interactions & Density Focus chain AA [auth AAA] Focus chain BA [auth AAA] Focus chain CB [auth BBB] Focus chain CC [auth CCC] Focus chain UC [auth DDD]