7QWL

TMEM106B filaments with Fold IIb from Multiple system atrophy (case 19)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.47 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Age-dependent formation of TMEM106B amyloid filaments in human brains.

Schweighauser, M.Arseni, D.Bacioglu, M.Huang, M.Lovestam, S.Shi, Y.Yang, Y.Zhang, W.Kotecha, A.Garringer, H.J.Vidal, R.Hallinan, G.I.Newell, K.L.Tarutani, A.Murayama, S.Miyazaki, M.Saito, Y.Yoshida, M.Hasegawa, K.Lashley, T.Revesz, T.Kovacs, G.G.van Swieten, J.Takao, M.Hasegawa, M.Ghetti, B.Spillantini, M.G.Ryskeldi-Falcon, B.Murzin, A.G.Goedert, M.Scheres, S.H.W.

(2022) Nature 605: 310-314

  • DOI: https://doi.org/10.1038/s41586-022-04650-z
  • Primary Citation of Related Structures:  
    7QVC, 7QVF, 7QWG, 7QWL, 7QWM

  • PubMed Abstract: 

    Many age-dependent neurodegenerative diseases, such as Alzheimer's and Parkinson's, are characterized by abundant inclusions of amyloid filaments. Filamentous inclusions of the proteins tau, amyloid-β, α-synuclein and transactive response DNA-binding protein (TARDBP; also known as TDP-43) are the most common 1,2 . Here we used structure determination by cryogenic electron microscopy to show that residues 120-254 of the lysosomal type II transmembrane protein 106B (TMEM106B) also form amyloid filaments in human brains. We determined the structures of TMEM106B filaments from a number of brain regions of 22 individuals with abundant amyloid deposits, including those resulting from sporadic and inherited tauopathies, amyloid-β amyloidoses, synucleinopathies and TDP-43 proteinopathies, as well as from the frontal cortex of 3 individuals with normal neurology and no or only a few amyloid deposits. We observed three TMEM106B folds, with no clear relationships between folds and diseases. TMEM106B filaments correlated with the presence of a 29-kDa sarkosyl-insoluble fragment and globular cytoplasmic inclusions, as detected by an antibody specific to the carboxy-terminal region of TMEM106B. The identification of TMEM106B filaments in the brains of older, but not younger, individuals with normal neurology indicates that they form in an age-dependent manner.


  • Organizational Affiliation

    Medical Research Council Laboratory of Molecular Biology, Cambridge, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transmembrane protein 106B
A, B, C
274Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NUM4 (Homo sapiens)
Explore Q9NUM4 
Go to UniProtKB:  Q9NUM4
PHAROS:  Q9NUM4
GTEx:  ENSG00000106460 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NUM4
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.47 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION4.0

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (MRC, United Kingdom)United Kingdom--

Revision History  (Full details and data files)

  • Version 1.0: 2022-03-09
    Type: Initial release
  • Version 1.1: 2022-04-13
    Changes: Database references
  • Version 1.2: 2022-05-25
    Changes: Database references