7QWA | pdb_00007qwa

CC-Type2-(UgUe)4

PDB DOI: https://doi.org/10.2210/pdb7QWA/pdb

Classification: DE NOVO PROTEIN
Organism(s): synthetic construct
Mutation(s): No

Deposited: 2022-01-25 Released: 2023-02-01
Deposition Author(s): Martin, F.J.O., Zieleniewski, F., Dawson, W.M., Woolfson, D.N.
Funding Organization(s): European Research Council (ERC), Engineering and Physical Sciences Research Council, Biotechnology and Biological Sciences Research Council (BBSRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.54 Å
R-Value Free:
0.266 (Depositor), 0.277 (DCC)
R-Value Work:
0.227 (Depositor)
R-Value Observed:
0.229 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

CC-Type2-(UgUe)4

Martin, F.J.O., Zieleniewski, F., Dawson, W.M., Woolfson, D.N.

To be published.

Macromolecule Content

Total Structure Weight: 20.44 kDa
Atom Count: 1,486
Modeled Residue Count: 182
Deposited Residue Count: 192
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CC-Type2-(UgUe)4	A, B, C, D, E A, B, C, D, E, F	32	synthetic construct	Mutation(s): 0

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain G [auth B] MOL2 format, chain G [auth B] mmCIF format, chain G [auth B]	G [auth B]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain G [auth B] Interactions & Density Focus chain G [auth B]
NH4 Query on NH4 Download:Ideal Coordinates CCD File SDF format, chain H [auth B] MOL2 format, chain H [auth B] mmCIF format, chain H [auth B]	H [auth B]	AMMONIUM ION H₄ N QGZKDVFQNNGYKY-UHFFFAOYSA-O		Interactions Focus chain H [auth B] Interactions & Density Focus chain H [auth B]

Modified Residues 2 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
4BF Query on 4BF	A, B, C, D, E A, B, C, D, E, F	L-PEPTIDE LINKING	C₉ H₁₀ Br N O₂		TYR
AIB Query on AIB	A, B, C, D, E A, B, C, D, E, F	L-PEPTIDE LINKING	C₄ H₉ N O₂		ALA

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.54 Å
R-Value Free: 0.266 (Depositor), 0.277 (DCC)
R-Value Work: 0.227 (Depositor)
R-Value Observed: 0.229 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 123.965	α = 90
b = 36.213	β = 96.74
c = 45.491	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
DIALS	data reduction
Aimless	data scaling
SHELXDE	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-02-01

Deposition Author(s):

Zieleniewski, F.

Funding Organization	Location	Grant Number
European Research Council (ERC)	United Kingdom	340764
Engineering and Physical Sciences Research Council	United Kingdom	EP/G036764
Biotechnology and Biological Sciences Research Council (BBSRC)	United Kingdom	BB R00661X 1

Revision History (Full details and data files)

Version 1.0: 2023-02-01
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.