7QSC | pdb_00007qsc

GTPase IN COMPLEX WITH GDP.MGF3-

PDB DOI: https://doi.org/10.2210/pdb7QSC/pdb

Classification: HYDROLASE
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2022-01-13 Released: 2023-01-25
Deposition Author(s): Baumann, P., Jin, Y.
Funding Organization(s): Wellcome Trust

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.91 Å
R-Value Free:
0.294 (Depositor), 0.305 (DCC)
R-Value Work:
0.244 (Depositor), 0.255 (DCC)
R-Value Observed:
0.246 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

GTPase IN COMPLEX WITH GDP.MGF3-

Baumann, P., Jin, Y.

To be published.

Macromolecule Content

Total Structure Weight: 99.48 kDa
Atom Count: 6,275
Modeled Residue Count: 731
Deposited Residue Count: 872
Unique protein chains: 2

Macromolecules

Find similar proteins by:

| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Rho GTPase-activating protein 1	A, C	244	Homo sapiens	Mutation(s): 1 Gene Names: ARHGAP1, CDC42GAP, RHOGAP1
UniProt & NIH Common Fund Data Resources
Find proteins for Q07960 (Homo sapiens) Explore Q07960 Go to UniProtKB: Q07960
PHAROS: Q07960 GTEx: ENSG00000175220
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q07960
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Transforming protein RhoA	B, D	192	Homo sapiens	Mutation(s): 1 Gene Names: RHOA, ARH12, ARHA, RHO12 EC: 3.6.5.2
UniProt & NIH Common Fund Data Resources
Find proteins for P61586 (Homo sapiens) Explore P61586 Go to UniProtKB: P61586
PHAROS: P61586 GTEx: ENSG00000067560
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P61586
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GDP (Subject of Investigation/LOI) Query on GDP Download:Ideal Coordinates CCD File SDF format, chain H [auth D] SDF format, chain E [auth B] MOL2 format, chain H [auth D] MOL2 format, chain E [auth B] mmCIF format, chain H [auth D] mmCIF format, chain E [auth B]	E [auth B], H [auth D]	GUANOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₁ P₂ QGWNDRXFNXRZMB-UUOKFMHZSA-N		Interactions Focus chain E [auth B] Focus chain H [auth D] Interactions & Density Focus chain E [auth B] Focus chain H [auth D]
MGF (Subject of Investigation/LOI) Query on MGF Download:Ideal Coordinates CCD File SDF format, chain I [auth D] SDF format, chain F [auth B] MOL2 format, chain I [auth D] MOL2 format, chain F [auth B] mmCIF format, chain I [auth D] mmCIF format, chain F [auth B]	F [auth B], I [auth D]	TRIFLUOROMAGNESATE F₃ Mg GJOMWUHGUQLOAC-UHFFFAOYSA-K		Interactions Focus chain F [auth B] Focus chain I [auth D] Interactions & Density Focus chain F [auth B] Focus chain I [auth D]
MG (Subject of Investigation/LOI) Query on MG Download:Ideal Coordinates CCD File SDF format, chain J [auth D] SDF format, chain G [auth B] MOL2 format, chain J [auth D] MOL2 format, chain G [auth B] mmCIF format, chain J [auth D] mmCIF format, chain G [auth B]	G [auth B], J [auth D]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain G [auth B] Focus chain J [auth D] Interactions & Density Focus chain G [auth B] Focus chain J [auth D]