7QJB | pdb_00007qjb

Structure of recombinant human gamma-Tubulin Ring Complex 12-spoked assembly intermediate (spokes 3-14, homogeneous dataset)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history

Literature

Modular assembly of the principal microtubule nucleator gamma-TuRC.

Wurtz, M.Zupa, E.Atorino, E.S.Neuner, A.Bohler, A.Rahadian, A.S.Vermeulen, B.J.A.Tonon, G.Eustermann, S.Schiebel, E.Pfeffer, S.

(2022) Nat Commun 13: 473-473

  • DOI: https://doi.org/10.1038/s41467-022-28079-0
  • Primary Citation Related Structures: 
    7QJ0, 7QJ1, 7QJ2, 7QJ3, 7QJ4, 7QJ5, 7QJ6, 7QJ7, 7QJ8, 7QJ9, 7QJA, 7QJB, 7QJC, 7QJD, 7QJE

  • PubMed Abstract: 

    The gamma-tubulin ring complex (γ-TuRC) is the principal microtubule nucleation template in vertebrates. Recent cryo-EM reconstructions visualized the intricate quaternary structure of the γ-TuRC, containing more than thirty subunits, raising fundamental questions about γ-TuRC assembly and the role of actin as an integral part of the complex. Here, we reveal the structural mechanism underlying modular γ-TuRC assembly and identify a functional role of actin in microtubule nucleation. During γ-TuRC assembly, a GCP6-stabilized core comprising GCP2-3-4-5-4-6 is expanded by stepwise recruitment, selective stabilization and conformational locking of four pre-formed GCP2-GCP3 units. Formation of the lumenal bridge specifies incorporation of the terminal GCP2-GCP3 unit and thereby leads to closure of the γ-TuRC ring in a left-handed spiral configuration. Actin incorporation into the complex is not relevant for γ-TuRC assembly and structural integrity, but determines γ-TuRC geometry and is required for efficient microtubule nucleation and mitotic chromosome alignment in vivo.


  • Organizational Affiliation
    • Zentrum für Molekulare Biologie der Universität Heidelberg, DKFZ-ZMBH Allianz, Im Neuenheimer Feld 282, 69120, Heidelberg, Germany.

Macromolecule Content 

  • Total Structure Weight: 2,626.35 kDa 
  • Atom Count: 108,374 
  • Modeled Residue Count: 13,396 
  • Deposited Residue Count: 23,174 
  • Unique protein chains: 8

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Tubulin gamma-1 chain451Homo sapiensMutation(s): 0 
Gene Names: TUBG1TUBG
UniProt & NIH Common Fund Data Resources
Find proteins for P23258 (Homo sapiens)
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PHAROS:  P23258
GTEx:  ENSG00000131462 
Entity Groups
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UniProt GroupP23258
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
actin, cytoplasmic 1C [auth e]375Homo sapiensMutation(s): 0 
Gene Names: ACTB
UniProt
Find proteins for A0A6I9HGD1 (Geospiza fortis)
Explore A0A6I9HGD1 
Go to UniProtKB:  A0A6I9HGD1
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UniProt GroupA0A6I9HGD1
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Gamma-tubulin complex component 3907Homo sapiensMutation(s): 0 
Gene Names: TUBGCP3GCP3
UniProt & NIH Common Fund Data Resources
Find proteins for Q96CW5 (Homo sapiens)
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PHAROS:  Q96CW5
GTEx:  ENSG00000126216 
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UniProt GroupQ96CW5
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Gamma-tubulin complex component 2E [auth C],
G [auth E],
I [auth G],
O [auth M]
902Homo sapiensMutation(s): 0 
Gene Names: TUBGCP2GCP2
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BSJ2 (Homo sapiens)
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PHAROS:  Q9BSJ2
GTEx:  ENSG00000130640 
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UniProt GroupQ9BSJ2
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Reference Sequence
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Gamma-tubulin complex component 4K [auth I],
M [auth K]
667Homo sapiensMutation(s): 0 
Gene Names: TUBGCP476PGCP4
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UGJ1 (Homo sapiens)
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PHAROS:  Q9UGJ1
GTEx:  ENSG00000137822 
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UniProt GroupQ9UGJ1
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Reference Sequence
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Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
Gamma-tubulin complex component 5IA [auth l],
L [auth J]
1,024Homo sapiensMutation(s): 0 
Gene Names: TUBGCP5GCP5KIAA1899
UniProt & NIH Common Fund Data Resources
Find proteins for Q96RT8 (Homo sapiens)
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PHAROS:  Q96RT8
GTEx:  ENSG00000275835 
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UniProt GroupQ96RT8
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Reference Sequence
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Entity ID: 7
MoleculeChains  Sequence LengthOrganismDetailsImage
Gamma-tubulin complex component 6GA [auth c],
N [auth L]
1,819Homo sapiensMutation(s): 0 
Gene Names: TUBGCP6GCP6KIAA1669
UniProt & NIH Common Fund Data Resources
Find proteins for Q96RT7 (Homo sapiens)
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PHAROS:  Q96RT7
GTEx:  ENSG00000128159 
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UniProt GroupQ96RT7
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Reference Sequence
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Entity ID: 8
MoleculeChains  Sequence LengthOrganismDetailsImage
Mitotic-spindle organizing protein 1CA [auth m],
EA [auth b],
FA [auth d],
Q [auth i],
R [auth k]
82Homo sapiensMutation(s): 0 
Gene Names: MZT1C13orf37MOZART1
UniProt & NIH Common Fund Data Resources
Find proteins for Q08AG7 (Homo sapiens)
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PHAROS:  Q08AG7
GTEx:  ENSG00000204899 
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UniProt GroupQ08AG7
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONRELION3.0

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanyPF 963/1-4
German Research Foundation (DFG)GermanySchi 295/4-4

Revision History  (Full details and data files)

  • Version 1.0: 2022-01-26
    Type: Initial release
  • Version 1.1: 2022-02-09
    Changes: Database references
  • Version 1.2: 2024-07-17
    Changes: Data collection, Refinement description