7QIG | pdb_00007qig

Infectious mouse-adapted RML scrapie prion fibril purified from terminally-infected mouse brains


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.70 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation 3D Report Full Report

Validation slider image for 7QIG

This is version 1.2 of the entry. See complete history

Literature

2.7 angstrom cryo-EM structure of ex vivo RML prion fibrils.

Manka, S.W.Zhang, W.Wenborn, A.Betts, J.Joiner, S.Saibil, H.R.Collinge, J.Wadsworth, J.D.F.

(2022) Nat Commun 13: 4004-4004

  • DOI: https://doi.org/10.1038/s41467-022-30457-7
  • Primary Citation Related Structures: 
    7QIG

  • PubMed Abstract: 

    Mammalian prions propagate as distinct strains and are composed of multichain assemblies of misfolded host-encoded prion protein (PrP). Here, we present a near-atomic resolution cryo-EM structure of PrP fibrils present in highly infectious prion rod preparations isolated from the brains of RML prion-infected mice. We found that prion rods comprise single-protofilament helical amyloid fibrils that coexist with twisted pairs of the same protofilaments. Each rung of the protofilament is formed by a single PrP monomer with the ordered core comprising PrP residues 94-225, which folds to create two asymmetric lobes with the N-linked glycans and the glycosylphosphatidylinositol anchor projecting from the C-terminal lobe. The overall architecture is comparable to that of recently reported PrP fibrils isolated from the brain of hamsters infected with the 263K prion strain. However, there are marked conformational variations that could result from differences in PrP sequence and/or represent distinguishing features of the distinct prion strains.


  • Organizational Affiliation
    • MRC Prion Unit at UCL, Institute of Prion Diseases, University College London, 33 Cleveland Street, London, W1W 7FF, UK.

Macromolecule Content 

  • Total Structure Weight: 45.87 kDa 
  • Atom Count: 3,213 
  • Modeled Residue Count: 396 
  • Deposited Residue Count: 396 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Major prion protein
A, B, C
132Mus musculusMutation(s): 0 
UniProt
Find proteins for P04925 (Mus musculus)
Explore P04925 
Go to UniProtKB:  P04925
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP04925
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.70 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (MRC, United Kingdom)United KingdomMC_U12316055
Medical Research Council (MRC, United Kingdom)United KingdomMC_UU_00024/5
Wellcome TrustUnited Kingdom079605/Z/06/Z
Wellcome TrustUnited Kingdom101488/Z/13/Z

Revision History  (Full details and data files)

  • Version 1.0: 2022-07-27
    Type: Initial release
  • Version 1.1: 2024-11-13
    Changes: Data collection, Structure summary
  • Version 1.2: 2025-07-09
    Changes: Data collection