7PKQ

Small subunit of the Chlamydomonas reinhardtii mitoribosome

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history. 


Literature

The Chlamydomonas mitochondrial ribosome: how to build a ribosome from RNA fragments

Waltz, F., Salinas-Giege, T., Englmeier, R., Meichel, H., Soufari, H., Kuhn, L., Pfeffer, S., Foerster, F., Engel, B.D., Giege, P., Drouard, L., Hashem, Y.

To be published.

Macromolecules

Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
mS35A [auth B]883Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3CST5 (Chlamydomonas reinhardtii)
Explore A0A2K3CST5 
Go to UniProtKB:  A0A2K3CST5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3CST5
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
mS45B [auth C]999Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3DM91 (Chlamydomonas reinhardtii)
Explore A0A2K3DM91 
Go to UniProtKB:  A0A2K3DM91
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3DM91
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
mS45-insertC [auth D]425Chlamydomonas reinhardtiiMutation(s): 0 
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
mS31/46D [auth K]186Chlamydomonas reinhardtiiMutation(s): 0 
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
mS105E [auth L],
F [auth M],
G [auth N]		271Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3DAY3 (Chlamydomonas reinhardtii)
Explore A0A2K3DAY3 
Go to UniProtKB:  A0A2K3DAY3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3DAY3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
mS106H [auth O]516Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3DZV7 (Chlamydomonas reinhardtii)
Explore A0A2K3DZV7 
Go to UniProtKB:  A0A2K3DZV7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3DZV7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
mS107I [auth P]416Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3CRX4 (Chlamydomonas reinhardtii)
Explore A0A2K3CRX4 
Go to UniProtKB:  A0A2K3CRX4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3CRX4
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Unk1J [auth U]33Chlamydomonas reinhardtiiMutation(s): 0 
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Unk2K [auth V]152Chlamydomonas reinhardtiiMutation(s): 0 
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Unk3L [auth W]54Chlamydomonas reinhardtiiMutation(s): 0 
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Unk4M [auth X]81Chlamydomonas reinhardtiiMutation(s): 0 
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Unk5N [auth Y]108Chlamydomonas reinhardtiiMutation(s): 0 
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Unk6O [auth Z]571Chlamydomonas reinhardtiiMutation(s): 0 
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
uS4mP [auth d]415Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3E198 (Chlamydomonas reinhardtii)
Explore A0A2K3E198 
Go to UniProtKB:  A0A2K3E198
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3E198
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial ribosomal protein S6Q [auth f]122Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8JGX6 (Chlamydomonas reinhardtii)
Explore A8JGX6 
Go to UniProtKB:  A8JGX6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8JGX6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
bS16mR [auth p]88Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3D9S4 (Chlamydomonas reinhardtii)
Explore A0A2K3D9S4 
Go to UniProtKB:  A0A2K3D9S4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3D9S4
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
bS18mS [auth r]356Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3DDW6 (Chlamydomonas reinhardtii)
Explore A0A2K3DDW6 
Go to UniProtKB:  A0A2K3DDW6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3DDW6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
mS26T [auth w]193Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3DGK2 (Chlamydomonas reinhardtii)
Explore A0A2K3DGK2 
Go to UniProtKB:  A0A2K3DGK2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3DGK2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
bS1mY [auth a]253Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8IB56 (Chlamydomonas reinhardtii)
Explore A8IB56 
Go to UniProtKB:  A8IB56
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8IB56
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
uS2mZ [auth b]530Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3CXL0 (Chlamydomonas reinhardtii)
Explore A0A2K3CXL0 
Go to UniProtKB:  A0A2K3CXL0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3CXL0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
S5 DRBM domain-containing proteinAA [auth e]368Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3DFB5 (Chlamydomonas reinhardtii)
Explore A0A2K3DFB5 
Go to UniProtKB:  A0A2K3DFB5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3DFB5
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
uS15mBA [auth o]319Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3CQY8 (Chlamydomonas reinhardtii)
Explore A0A2K3CQY8 
Go to UniProtKB:  A0A2K3CQY8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3CQY8
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
mS34CA [auth z]133Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3DPT3 (Chlamydomonas reinhardtii)
Explore A0A2K3DPT3 
Go to UniProtKB:  A0A2K3DPT3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3DPT3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
mS23DA [auth v]190Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8IW03 (Chlamydomonas reinhardtii)
Explore A8IW03 
Go to UniProtKB:  A8IW03
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8IW03
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
uS17mEA [auth q]220Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3DKB4 (Chlamydomonas reinhardtii)
Explore A0A2K3DKB4 
Go to UniProtKB:  A0A2K3DKB4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3DKB4
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
uS12mFA [auth l]128Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3E3V0 (Chlamydomonas reinhardtii)
Explore A0A2K3E3V0 
Go to UniProtKB:  A0A2K3E3V0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3E3V0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
uS8mGA [auth h]412Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3CNM3 (Chlamydomonas reinhardtii)
Explore A0A2K3CNM3 
Go to UniProtKB:  A0A2K3CNM3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3CNM3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
uS11mHA [auth k]233Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3DQ48 (Chlamydomonas reinhardtii)
Explore A0A2K3DQ48 
Go to UniProtKB:  A0A2K3DQ48
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3DQ48
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal_S10 domain-containing proteinIA [auth j]612Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3CN25 (Chlamydomonas reinhardtii)
Explore A0A2K3CN25 
Go to UniProtKB:  A0A2K3CN25
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3CN25
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial ribosomal protein S13JA [auth m]124Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8J3J1 (Chlamydomonas reinhardtii)
Explore A8J3J1 
Go to UniProtKB:  A8J3J1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8J3J1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial ribosomal protein S14KA [auth n]112Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8J6P9 (Chlamydomonas reinhardtii)
Explore A8J6P9 
Go to UniProtKB:  A8J6P9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8J6P9
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
Plastid-specific ribosomal protein 4LA [auth u]136Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8J1A6 (Chlamydomonas reinhardtii)
Explore A8J1A6 
Go to UniProtKB:  A8J1A6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8J1A6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
uS19mMA [auth s]116Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3DHN0 (Chlamydomonas reinhardtii)
Explore A0A2K3DHN0 
Go to UniProtKB:  A0A2K3DHN0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3DHN0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
uS7m,Ribosomal_S7 domain-containing protein,Ribosomal_S7 domain-containing protein,Ribosomal_S7 domain-containing proteinNA [auth g]324Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3CXT8 (Chlamydomonas reinhardtii)
Explore A0A2K3CXT8 
Go to UniProtKB:  A0A2K3CXT8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3CXT8
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S9, chloroplasticOA [auth i]446Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3E2Q3 (Chlamydomonas reinhardtii)
Explore A0A2K3E2Q3 
Go to UniProtKB:  A0A2K3E2Q3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3E2Q3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
mS29PA [auth x]485Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3DXG4 (Chlamydomonas reinhardtii)
Explore A0A2K3DXG4 
Go to UniProtKB:  A0A2K3DXG4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3DXG4
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal_S3_C domain-containing proteinQA [auth c]490Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3D7R0 (Chlamydomonas reinhardtii)
Explore A0A2K3D7R0 
Go to UniProtKB:  A0A2K3D7R0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3D7R0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
mS33RA [auth y]209Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8JI15 (Chlamydomonas reinhardtii)
Explore A8JI15 
Go to UniProtKB:  A8JI15
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8JI15
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  3D Structure
Entity ID: 19
MoleculeChains LengthOrganismImage
S1 rRNAU [auth 1]101Chlamydomonas reinhardtii
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  3D Structure
Entity ID: 20
MoleculeChains LengthOrganismImage
S4 rRNAV [auth 4]415Chlamydomonas reinhardtii
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  3D Structure
Entity ID: 21
MoleculeChains LengthOrganismImage
S2 rRNAW [auth 2]213Chlamydomonas reinhardtii
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  3D Structure
Entity ID: 22
MoleculeChains LengthOrganismImage
S3 rRNAX [auth 3]393Chlamydomonas reinhardtii
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
European Research Council (ERC)FranceTransTryp ID:759120
Agence Nationale de la Recherche (ANR)FranceANR-11-LABX-0057_MITOCROSS
Agence Nationale de la Recherche (ANR)FranceMITRA, ANR-16-CE11-0024-02
Agence Nationale de la Recherche (ANR)FranceDAMIA, ANR-20-CE11-0021

Revision History  (Full details and data files)

  • Version 1.0: 2023-06-14
    Type: Initial release
  • Version 1.1: 2024-07-17
    Changes: Data collection