7PJS | pdb_00007pjs

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

• PDB DOI: https://doi.org/10.2210/pdb7PJS/pdb
• NAKB: 7PJS
• EM Map EMD-13458: EMDB EMDataResource

• Classification: RIBOSOME
• Organism(s): Escherichia coli
• Mutation(s): No 


• Deposited: 2021-08-24 Released: 2021-10-20 
• Deposition Author(s): Petrychenko, V., Peng, B.Z., Schwarzer, A.C., Peske, F., Rodnina, M.V., Fischer, N.
• Funding Organization(s): German Research Foundation (DFG), Max Planck Society

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.35 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental

Literature

Structural mechanism of GTPase-powered ribosome-tRNA movement

Petrychenko, V., Peng, B.Z., Schwarzer, A.C., Peske, F., Rodnina, M.V., Fischer, N.

(2021) Nat Commun 12: 5933

• DOI: https://doi.org/10.1038/s41467-021-26133-x

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 51-mer - A1B1C1D1E1F1G1H1I1J1K1L1M1N1O1P1Q1R1S1T1U1V1W1X1Y1Z1a1b1c1d1e1f1g1h1i1j1k1l1m1n1o1p1q1r1s1t1u1v1w1x1y1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 51-mer - A2B1C1D1E1F1G1H1I1J1K1L1M1N1O1P1Q1R1S1T1U1V1W1X1Y1Z1a1b1c1d1e1f1g1h1i1j1k1l1m1n1o1p1q1r1s1t1u1v1w1x1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 2,244.17 kDa 
• Atom Count: 147,741 
• Modeled Residue Count: 10,681 
• Deposited Residue Count: 10,973 
• Unique protein chains: 52
• Unique nucleic acid chains: 6

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L32	A [auth 0]	57	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0A7N4 (Escherichia coli (strain K12)) Explore P0A7N4  Go to UniProtKB:  P0A7N4

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L33	B [auth 1]	55	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0A7N9 (Escherichia coli (strain K12)) Explore P0A7N9  Go to UniProtKB:  P0A7N9

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L34	C [auth 2]	46	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0A7P5 (Escherichia coli (strain K12)) Explore P0A7P5  Go to UniProtKB:  P0A7P5

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L35	D [auth 3]	65	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0A7Q1 (Escherichia coli (strain K12)) Explore P0A7Q1  Go to UniProtKB:  P0A7Q1

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L36	E [auth 4]	38	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0A7Q6 (Escherichia coli (strain K12)) Explore P0A7Q6  Go to UniProtKB:  P0A7Q6

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L10	F [auth 5]	165	Escherichia coli	Mutation(s): 0

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L31	G [auth 6]	70	Escherichia coli	Mutation(s): 0

Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L2	J [auth C]	273	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P60422 (Escherichia coli (strain K12)) Explore P60422  Go to UniProtKB:  P60422

Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L3	K [auth D]	209	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P60438 (Escherichia coli (strain K12)) Explore P60438  Go to UniProtKB:  P60438

Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L4	L [auth E]	201	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P60723 (Escherichia coli (strain K12)) Explore P60723  Go to UniProtKB:  P60723

Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L5	M [auth F]	179	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P62399 (Escherichia coli (strain K12)) Explore P62399  Go to UniProtKB:  P62399

Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L6	N [auth G]	177	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0AG55 (Escherichia coli (strain K12)) Explore P0AG55  Go to UniProtKB:  P0AG55

Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L9	O [auth H]	149	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0A7R1 (Escherichia coli (strain K12)) Explore P0A7R1  Go to UniProtKB:  P0A7R1

Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L11	P [auth I]	142	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0A7J7 (Escherichia coli (strain K12)) Explore P0A7J7  Go to UniProtKB:  P0A7J7

Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L13	Q [auth J]	142	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0AA10 (Escherichia coli (strain K12)) Explore P0AA10  Go to UniProtKB:  P0AA10

Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L14	R [auth K]	123	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0ADY3 (Escherichia coli (strain K12)) Explore P0ADY3  Go to UniProtKB:  P0ADY3

Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L15	S [auth L]	144	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P02413 (Escherichia coli (strain K12)) Explore P02413  Go to UniProtKB:  P02413

Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L16	T [auth M]	136	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0ADY7 (Escherichia coli (strain K12)) Explore P0ADY7  Go to UniProtKB:  P0ADY7

Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L17	U [auth N]	127	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0AG44 (Escherichia coli (strain K12)) Explore P0AG44  Go to UniProtKB:  P0AG44

Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L18	V [auth O]	117	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0C018 (Escherichia coli (strain K12)) Explore P0C018  Go to UniProtKB:  P0C018

Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L19	W [auth P]	115	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0A7K6 (Escherichia coli (strain K12)) Explore P0A7K6  Go to UniProtKB:  P0A7K6

Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L20	X [auth Q]	118	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0A7L3 (Escherichia coli (strain K12)) Explore P0A7L3  Go to UniProtKB:  P0A7L3

Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L21	Y [auth R]	103	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0AG48 (Escherichia coli (strain K12)) Explore P0AG48  Go to UniProtKB:  P0AG48

Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L22	Z [auth S]	110	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P61175 (Escherichia coli (strain K12)) Explore P61175  Go to UniProtKB:  P61175

Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L23	AA [auth T]	100	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0ADZ0 (Escherichia coli (strain K12)) Explore P0ADZ0  Go to UniProtKB:  P0ADZ0

Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L24	BA [auth U]	104	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P60624 (Escherichia coli (strain K12)) Explore P60624  Go to UniProtKB:  P60624

Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L25	CA [auth V]	94	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P68919 (Escherichia coli (strain K12)) Explore P68919  Go to UniProtKB:  P68919

Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L27	DA [auth W]	85	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0A7L8 (Escherichia coli (strain K12)) Explore P0A7L8  Go to UniProtKB:  P0A7L8

Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L28	EA [auth X]	78	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0A7M2 (Escherichia coli (strain K12)) Explore P0A7M2  Go to UniProtKB:  P0A7M2

Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L29	FA [auth Y]	63	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0A7M6 (Escherichia coli (strain K12)) Explore P0A7M6  Go to UniProtKB:  P0A7M6

Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L30	GA [auth Z]	59	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0AG51 (Escherichia coli (strain K12)) Explore P0AG51  Go to UniProtKB:  P0AG51

Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S2	IA [auth b]	240	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for C3TPN2 (Escherichia coli) Explore C3TPN2  Go to UniProtKB:  C3TPN2

Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S3	JA [auth c]	233	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for C3SQX2 (Escherichia coli) Explore C3SQX2  Go to UniProtKB:  C3SQX2

Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S4	KA [auth d]	206	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for C3SR62 (Escherichia coli) Explore C3SR62  Go to UniProtKB:  C3SR62

Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S5	LA [auth e]	167	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for C3SR27 (Escherichia coli) Explore C3SR27  Go to UniProtKB:  C3SR27

Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S6	MA [auth f]	135	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P02358 (Escherichia coli (strain K12)) Explore P02358  Go to UniProtKB:  P02358

Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S7	NA [auth g]	179	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P02359 (Escherichia coli (strain K12)) Explore P02359  Go to UniProtKB:  P02359

Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S8	OA [auth h]	130	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for C3SR12 (Escherichia coli) Explore C3SR12  Go to UniProtKB:  C3SR12

Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S9	PA [auth i]	130	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for C3SRY2 (Escherichia coli) Explore C3SRY2  Go to UniProtKB:  C3SRY2

Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S10	QA [auth j]	103	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for C3SQT7 (Escherichia coli) Explore C3SQT7  Go to UniProtKB:  C3SQT7

Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S11	RA [auth k]	129	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for C3SR57 (Escherichia coli) Explore C3SR57  Go to UniProtKB:  C3SR57

Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S12	SA [auth l]	124	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for C3SQR7 (Escherichia coli) Explore C3SQR7  Go to UniProtKB:  C3SQR7

Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S13	TA [auth m]	118	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for C3SR52 (Escherichia coli) Explore C3SR52  Go to UniProtKB:  C3SR52

Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S14	UA [auth n]	102	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for C3SR07 (Escherichia coli) Explore C3SR07  Go to UniProtKB:  C3SR07

Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S15	VA [auth o]	89	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for C3SSQ7 (Escherichia coli) Explore C3SSQ7  Go to UniProtKB:  C3SSQ7

Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S16	WA [auth p]	82	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for C3SYP2 (Escherichia coli) Explore C3SYP2  Go to UniProtKB:  C3SYP2

Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S17	XA [auth q]	84	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for C3SQY7 (Escherichia coli) Explore C3SQY7  Go to UniProtKB:  C3SQY7

Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S18	YA [auth r]	75	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for C3SFP7 (Escherichia coli) Explore C3SFP7  Go to UniProtKB:  C3SFP7

Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S19	ZA [auth s]	92	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for C3SQW2 (Escherichia coli) Explore C3SQW2  Go to UniProtKB:  C3SQW2

Entity ID: 53
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S20	AB [auth t]	87	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for C3TRH7 (Escherichia coli) Explore C3TRH7  Go to UniProtKB:  C3TRH7

Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S21	BB [auth u]	71	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for C3STZ7 (Escherichia coli) Explore C3STZ7  Go to UniProtKB:  C3STZ7

Entity ID: 57
Molecule	Chains	Sequence Length	Organism	Details	Image
Dipeptide (FME-PHE)	EB [auth y]	2	Escherichia coli	Mutation(s): 0

Entity ID: 8
Molecule	Chains	Length	Organism	Image
23S ribosomal RNA	H [auth A]	2,903	Escherichia coli

Entity ID: 9
Molecule	Chains	Length	Organism	Image
5S ribosomal RNA	I [auth B]	120	Escherichia coli

Entity ID: 34
Molecule	Chains	Length	Organism	Image
16S ribosomal RNA	HA [auth a]	1,542	Escherichia coli

Entity ID: 55
Molecule	Chains	Length	Organism	Image
P-site tRNA(fMet)	CB [auth v]	77	Escherichia coli

Entity ID: 56
Molecule	Chains	Length	Organism	Image
P-site fMet-Phe-tRNA(Phe)	DB [auth w]	76	Escherichia coli

Entity ID: 58
Molecule	Chains	Length	Organism	Image
mRNA	FB [auth z]	33	Escherichia coli

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
AM2	DP [auth a], WO [auth a], YO [auth a], ZO [auth a]	APRAMYCIN C21 H41 N5 O11 XZNUGFQTQHRASN-XQENGBIVSA-N
ZN	HB [auth 4], IB [auth 6]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG	AC [auth A], AD [auth A], AE [auth A], AF [auth A], AG [auth A], AH [auth A], AI [auth A], AJ [auth A], AK [auth A], AL [auth A], AM [auth a], AN [auth a], AO [auth a], AP [auth a], BC [auth A], BD [auth A], BE [auth A], BF [auth A], BG [auth A], BH [auth A], BI [auth A], BJ [auth A], BK [auth A], BL [auth A], BM [auth a], BN [auth a], BO [auth a], BP [auth a], CC [auth A], CD [auth A], CE [auth A], CF [auth A], CG [auth A], CH [auth A], CI [auth A], CJ [auth A], CK [auth A], CL [auth A], CM [auth a], CN [auth a], CO [auth a], CP [auth a], DC [auth A], DD [auth A], DE [auth A], DF [auth A], DG [auth A], DH [auth A], DI [auth A], DJ [auth A], DK [auth A], DL [auth A], DM [auth a], DN [auth a], DO [auth a], EC [auth A], ED [auth A], EE [auth A], EF [auth A], EG [auth A], EH [auth A], EI [auth A], EJ [auth A], EK [auth A], EL [auth A], EM [auth a], EN [auth a], EO [auth a], EP [auth a], FC [auth A], FD [auth A], FE [auth A], FF [auth A], FG [auth A], FH [auth A], FI [auth A], FJ [auth A], FK [auth A], FL [auth A], FM [auth a], FN [auth a], FO [auth a], FP [auth a], GB [auth 0], GC [auth A], GD [auth A], GE [auth A], GF [auth A], GG [auth A], GH [auth A], GI [auth A], GJ [auth A], GK [auth A], GL [auth A], GM [auth a], GN [auth a], GO [auth a], GP [auth a], HC [auth A], HD [auth A], HE [auth A], HF [auth A], HG [auth A], HH [auth A], HI [auth A], HJ [auth A], HK [auth A], HL [auth A], HM [auth a], HN [auth a], HO [auth a], HP [auth a], IC [auth A], ID [auth A], IE [auth A], IF [auth A], IG [auth A], IH [auth A], II [auth A], IJ [auth A], IK [auth A], IL [auth B], IM [auth a], IN [auth a], IO [auth a], IP [auth a], JB [auth A], JC [auth A], JD [auth A], JE [auth A], JF [auth A], JG [auth A], JH [auth A], JI [auth A], JJ [auth A], JK [auth A], JL [auth B], JM [auth a], JN [auth a], JO [auth a], JP [auth a], KB [auth A], KC [auth A], KD [auth A], KE [auth A], KF [auth A], KG [auth A], KH [auth A], KI [auth A], KJ [auth A], KK [auth A], KL [auth B], KM [auth a], KN [auth a], KO [auth a], KP [auth a], LB [auth A], LC [auth A], LD [auth A], LE [auth A], LF [auth A], LG [auth A], LH [auth A], LI [auth A], LJ [auth A], LK [auth A], LL [auth B], LM [auth a], LN [auth a], LO [auth a], LP [auth m], MB [auth A], MC [auth A], MD [auth A], ME [auth A], MF [auth A], MG [auth A], MH [auth A], MI [auth A], MJ [auth A], MK [auth A], MM [auth a], MN [auth a], MO [auth a], MP [auth n], NB [auth A], NC [auth A], ND [auth A], NE [auth A], NF [auth A], NG [auth A], NH [auth A], NI [auth A], NJ [auth A], NK [auth A], NL [auth C], NM [auth a], NN [auth a], NO [auth a], OB [auth A], OC [auth A], OD [auth A], OE [auth A], OF [auth A], OG [auth A], OH [auth A], OI [auth A], OJ [auth A], OK [auth A], OL [auth C], OM [auth a], ON [auth a], OO [auth a], PB [auth A], PC [auth A], PD [auth A], PE [auth A], PF [auth A], PG [auth A], PH [auth A], PI [auth A], PJ [auth A], PK [auth A], PL [auth D], PM [auth a], PN [auth a], PO [auth a], QB [auth A], QC [auth A], QD [auth A], QE [auth A], QF [auth A], QG [auth A], QH [auth A], QI [auth A], QJ [auth A], QK [auth A], QL [auth N], QM [auth a], QN [auth a], QO [auth a], RB [auth A], RC [auth A], RD [auth A], RE [auth A], RF [auth A], RG [auth A], RH [auth A], RI [auth A], RJ [auth A], RK [auth A], RL [auth O], RM [auth a], RN [auth a], RO [auth a], SB [auth A], SC [auth A], SD [auth A], SE [auth A], SF [auth A], SG [auth A], SH [auth A], SI [auth A], SJ [auth A], SK [auth A], SL [auth P], SM [auth a], SN [auth a], SO [auth a], TB [auth A], TC [auth A], TD [auth A], TE [auth A], TF [auth A], TG [auth A], TH [auth A], TI [auth A], TJ [auth A], TK [auth A], TL [auth a], TM [auth a], TN [auth a], TO [auth a], UB [auth A], UC [auth A], UD [auth A], UE [auth A], UF [auth A], UG [auth A], UH [auth A], UI [auth A], UJ [auth A], UK [auth A], UL [auth a], UM [auth a], UN [auth a], UO [auth a], VB [auth A], VC [auth A], VD [auth A], VE [auth A], VF [auth A], VG [auth A], VH [auth A], VI [auth A], VJ [auth A], VL [auth a], VM [auth a], VN [auth a], VO [auth a], WB [auth A], WC [auth A], WD [auth A], WE [auth A], WF [auth A], WG [auth A], WH [auth A], WI [auth A], WJ [auth A], WK [auth A], WL [auth a], WM [auth a], WN [auth a], XB [auth A], XC [auth A], XD [auth A], XE [auth A], XF [auth A], XG [auth A], XH [auth A], XI [auth A], XJ [auth A], XK [auth A], XL [auth a], XM [auth a], XN [auth a], XO [auth a], YB [auth A], YC [auth A], YD [auth A], YE [auth A], YF [auth A], YG [auth A], YH [auth A], YI [auth A], YJ [auth A], YK [auth A], YL [auth a], YM [auth a], YN [auth a], ZB [auth A], ZC [auth A], ZD [auth A], ZE [auth A], ZF [auth A], ZG [auth A], ZH [auth A], ZI [auth A], ZJ [auth A], ZK [auth A], ZL [auth a], ZM [auth a], ZN [auth a]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N
NA	ML [auth B], VK [auth A]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
FME	EB [auth y]	L-PEPTIDE LINKING	C6 H11 N O3 S		MET

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.35 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION	3.1
MODEL REFINEMENT	PHENIX	16
MODEL REFINEMENT	ISOLDE	1.1.0
MODEL REFINEMENT	Coot	0.9.3

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2021-10-20 
Deposition Author(s): Petrychenko, V., Peng, B.Z., Schwarzer, A.C., Peske, F., Rodnina, M.V., Fischer, N.

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Funding Organization	Location	Grant Number
German Research Foundation (DFG)	Germany	Leibniz Prize (to M.V.R.) & SFB 860
Max Planck Society	Germany	--

Revision History  

• Version 1.0: 2021-10-20
  Type: Initial release
  
• Version 2.0: 2021-10-27
  Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Non-polymer description, Other, Structure summary
• Version 2.1: 2024-04-24
  Changes: Data collection, Refinement description
• Version 2.2: 2024-11-13
  Changes: Data collection, Structure summary
• Version 2.3: 2025-03-12
  Changes: Data collection