7P0M | pdb_00007p0m

Human mitochondrial Lon protease with substrate in the ATPase and protease domains

PDB DOI: https://doi.org/10.2210/pdb7P0M/pdb
EM Map EMD-13148: EMDB EMDataResource

Classification: HYDROLASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2021-06-30 Released: 2021-08-11
Deposition Author(s): Valentin Gese, G., Shahzad, S., Hallberg, B.M.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

A dual allosteric pathway drives human mitochondrial Lon

Valentin Gese, G., Shahzad, S., Pardo-Hernandez, C., Wramstedt, A., Falkenberg, M., Hallberg, M.

To be published.

Macromolecule Content

Total Structure Weight: 607.94 kDa
Atom Count: 25,185
Modeled Residue Count: 3,220
Deposited Residue Count: 5,447
Unique protein chains: 2

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lon protease homolog, mitochondrial	A, B, C, D, E A, B, C, D, E, F	895	Homo sapiens	Mutation(s): 1 Gene Names: LONP1, PRSS15 EC: 3.4.21.53
UniProt & NIH Common Fund Data Resources
Find proteins for P36776 (Homo sapiens) Explore P36776 Go to UniProtKB: P36776
PHAROS: P36776 GTEx: ENSG00000196365
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P36776
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Unknown peptide from human mitochondrial transcription factor A (TFAM)	G H [auth I] I [auth J] J [auth M] K [auth H] G, H [auth I], I [auth J], J [auth M], K [auth H], L, M [auth K]	11	Homo sapiens	Mutation(s): 0

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ATP Query on ATP Download:Ideal Coordinates CCD File SDF format, chain N [auth A] SDF format, chain V [auth F] SDF format, chain R [auth C] SDF format, chain P [auth B] MOL2 format, chain N [auth A] MOL2 format, chain V [auth F] MOL2 format, chain R [auth C] MOL2 format, chain P [auth B] mmCIF format, chain N [auth A] mmCIF format, chain V [auth F] mmCIF format, chain R [auth C] mmCIF format, chain P [auth B]	N [auth A], P [auth B], R [auth C], V [auth F]	ADENOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₃ P₃ ZKHQWZAMYRWXGA-KQYNXXCUSA-N		Interactions Focus chain N [auth A] Focus chain P [auth B] Focus chain R [auth C] Focus chain V [auth F] Interactions & Density Focus chain N [auth A] Focus chain P [auth B] Focus chain R [auth C] Focus chain V [auth F]
ADP Query on ADP Download:Ideal Coordinates CCD File SDF format, chain U [auth E] SDF format, chain T [auth D] MOL2 format, chain U [auth E] MOL2 format, chain T [auth D] mmCIF format, chain U [auth E] mmCIF format, chain T [auth D]	T [auth D], U [auth E]	ADENOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₀ P₂ XTWYTFMLZFPYCI-KQYNXXCUSA-N		Interactions Focus chain T [auth D] Focus chain U [auth E] Interactions & Density Focus chain T [auth D] Focus chain U [auth E]
MG Query on MG Download:Ideal Coordinates CCD File SDF format, chain Q [auth B] SDF format, chain W [auth F] SDF format, chain S [auth C] SDF format, chain O [auth A] MOL2 format, chain Q [auth B] MOL2 format, chain W [auth F] MOL2 format, chain S [auth C] MOL2 format, chain O [auth A] mmCIF format, chain Q [auth B] mmCIF format, chain W [auth F] mmCIF format, chain S [auth C] mmCIF format, chain O [auth A]	O [auth A], Q [auth B], S [auth C], W [auth F]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain O [auth A] Focus chain Q [auth B] Focus chain S [auth C] Focus chain W [auth F] Interactions & Density Focus chain O [auth A] Focus chain Q [auth B] Focus chain S [auth C] Focus chain W [auth F]